Add AnnData API widget tests #150
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* manually bringing in parquet processing * big int * fixing bug with parquet matrix processing * fix index parsing bug * removed print and console logs * added mat as kwarg * Update src/celldega/viz/widget.py Co-authored-by: Copilot <[email protected]> * Update js/read_parquet/network_from_parquet.js Co-authored-by: Copilot <[email protected]> * implemnting astype change --------- Co-authored-by: Copilot <[email protected]>
more efficient hash for sparse data Co-authored-by: Copilot <[email protected]>
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Pull Request Overview
Adds a new unit test to verify that the Landscape widget can be initialized with an AnnData object and correctly exposes parquet-encoded metadata and UMAP outputs.
- Introduce
make_simple_anndatahelper to generate a minimal AnnData instance. - Add
test_landscape_initializes_with_anndatato check the widget’smeta_cell_parquet,meta_cluster_parquet, andumap_parquetoutputs.
Comments suppressed due to low confidence (1)
tests/unit/test_viz/test_landscape_anndata.py:31
- The keyword argument
AnnDatalikely does not match the widget’s expected parameter name (e.g.,adata). Update this to the correct argument to ensure the widget initializes without errors.
widget = Landscape(base_url="https://example.com", AnnData=adata)
Base automatically changed from
DEGA-68-parquet-for-Landscape-traitlet-data-transfer
to
main
July 17, 2025 20:11
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Summary
AnnDataobjectTesting
npm test(fails: jest not found)pytest(fails: pytest-cov missing)https://chatgpt.com/codex/tasks/task_b_68780f224ffc832a908de69217fd1383