lapatinib_drs.py

birtwistlelab · arnabmutsuddy · Apr 26, 2021 · Apr 27, 2021 · Apr 29, 2021 · May 3, 2021
commit 91cdd11c334e3a4be7d47da66cf093a3d8e210ed
diff --git a/input_files/OmicsData_extended_au565.txt b/input_files/OmicsData_extended_au565.txt
diff --git a/jupyter_notebooks/egf_drs.py b/jupyter_notebooks/egf_drs.py
@@ -30,7 +30,7 @@
 parser.add_argument('--dose', metavar='dose', help='input dose in nM', default = 100.0)
 parser.add_argument('--cellpop', metavar='cellpop', help='starting cell population', default = 5)
 parser.add_argument('--td',metavar='td', help='cell line doubling time (hrs) ', default = 48)
-parser.add_argument('--sim_name',metavar='sim_name', help='insert exp name', default = 'egf_dose_response')
+parser.add_argument('--sim_name',metavar='sim_name', help='insert exp name', default = 'egf_drs_test')
 args = parser.parse_args()
 
 wd = str(os.getcwd()).replace("jupyter_notebooks","")
@@ -110,7 +110,7 @@
 
 
 
-th = 48
+th = 24
 
 output_dir = output_dose
 

diff --git a/jupyter_notebooks/egf_drs_outputs_palmetto.py b/jupyter_notebooks/egf_drs_outputs_palmetto.py
diff --git a/jupyter_notebooks/egf_drs_v2.py b/jupyter_notebooks/egf_drs_v2.py
diff --git a/jupyter_notebooks/lapatinib_drs_v2.py b/jupyter_notebooks/lapatinib_drs_v2.py
diff --git a/jupyter_notebooks/lapatinib_drs_v3.py b/jupyter_notebooks/lapatinib_drs_v3.py
diff --git a/jupyter_notebooks/lapatinib_drs_v4.py b/jupyter_notebooks/lapatinib_drs_v4.py
diff --git a/jupyter_notebooks/lapatinib_drs_v5.py b/jupyter_notebooks/lapatinib_drs_v5.py
diff --git a/jupyter_notebooks/lapatinib_drs_v6.py b/jupyter_notebooks/lapatinib_drs_v6.py
diff --git a/results_s3.txt b/results_s3.txt
@@ -0,0 +1,11 @@
+doses	r5	r6	r7	r8	total
+0.001	46.0	45.0	41.0	49.0	181.0
+0.002	50.0	48.0	48.0	46.0	192.0
+0.003	50.0	48.0	50.0	47.0	195.0
+0.004	49.0	49.0	47.0	52.0	197.0
+0.005	49.0	50.0	50.0	50.0	199.0
+0.006	50.0	50.0	49.0	50.0	199.0
+0.007	52.0	49.0	50.0	50.0	201.0
+0.008	50.0	49.0	50.0	50.0	199.0
+0.009	54.0	51.0	50.0	49.0	204.0
+0.01	50.0	52.0	50.0	49.0	201.0
diff --git a/tp_g0.txt b/tp_g0.txt
@@ -0,0 +1 @@
+4.400000000000000000e+01