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citation update
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doserjef committed Sep 26, 2024
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8 changes: 4 additions & 4 deletions README.md
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<!-- README.md is generated from README.Rmd. Please edit that file -->

# spAbundance <a href='https://www.doserlab.com/files/spabundance-web/'><img src="man/figures/logo.png" align="right" height="139" width="120"/></a>
# spAbundance <a href='https://doserlab.com/files/spabundance-web/'><img src="man/figures/logo.png" align="right" height="139" width="120"/></a>

[![](http://cranlogs.r-pkg.org/badges/grand-total/spAbundance?color=blue)](https://CRAN.R-project.org/package=spAbundance)
[![CRAN](https://www.r-pkg.org/badges/version/spAbundance)](https://CRAN.R-project.org/package=spAbundance)
[![Codecov test
coverage](https://codecov.io/gh/biodiverse/spAbundance/branch/main/graph/badge.svg)](https://codecov.io/gh/biodiverse/spAbundance?branch=main)
coverage](https://codecov.io/gh/biodiverse/spAbundance/branch/main/graph/badge.svg)](https://app.codecov.io/gh/biodiverse/spAbundance?branch=main)

`spAbundance` fits univariate (i.e., single-species) and multivariate
(i.e., multi-species) spatial N-mixture models, hierarchical distance
sampling models, and generalized linear mixed models using Markov chain
Monte Carlo (MCMC). Spatial models are fit using Nearest Neighbor
Gaussian Processes (NNGPs) to facilitate model fitting to large spatial
datasets. `spAbundance` uses analogous syntax to its “sister package”
[spOccupancy](https://www.doserlab.com/files/spoccupancy-web/) (Doser et
[spOccupancy](https://doserlab.com/files/spoccupancy-web/) (Doser et
al. 2022). Below we provide a very brief introduction to some of the
package’s functionality, and illustrate just one of the model fitting
functions. For more information, see the resources referenced at the
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linear mixed models in `spAbundance`, respectively. Given the similarity
in syntax to fitting occupancy models in the `spOccupancy` package, much
of the documentation on the [`spOccupancy`
website](https://www.doserlab.com/files/spoccupancy-web/) will also be
website](https://doserlab.com/files/spoccupancy-web/) will also be
helpful for fitting models in `spAbundance`. Please also consider
joining the [`spAbundance` and `spOccupancy` users google
group](https://groups.google.com/g/spocc-spabund-users) to learn from
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2 changes: 1 addition & 1 deletion inst/CITATION
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if (!exists("meta") || is.null(meta)) meta <- packageDescription("spAbundance")

citHeader("To cite package", sQuote(meta$Package), "in publications, please cite the Doser, Finley, Kéry, Zipkin (2024) paper. If using functions lfMsAbund, sfMsAbund, lfMsDS, or sfMsDS, please also cite the Doser, Finley, Banerjee (2023) paper that developed much of the code used for these functions.")
citHeader("To cite package", sQuote(meta$Package), "in publications, please cite the Doser, Finley, Kéry, Zipkin (2024) paper. If using functions lfMsAbund, sfMsAbund, lfMsNMix, sfMsNMix, lfMsDS, or sfMsDS, please also cite the Doser, Finley, Banerjee (2023) paper that developed much of the code used for these functions.")

bibentry(bibtype = "Article",
title = "{spAbundance: An R package for univariate and multivariate spatially-explicit abundance models}",
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