update to bioconda-utils v3.2.0, remove defaults, switch to .conda p…

…ackage format (#54)

Changes since `bioconda-utils v2.15.1`:

> ### ⚠ BREAKING CHANGES
> 
> * Separate docs-only requirements (#986)
> * Remove defaults channel dependency (#985)
> 
> ### Miscellaneous Chores
> 
> * Remove defaults channel dependency
([#985](https://www.github.com/bioconda/bioconda-utils/issues/985))
([eb043dc](https://www.github.com/bioconda/bioconda-utils/commit/eb043dc2649bcdf63c11f19993660b58ec215cb7))
> * Separate docs-only requirements
([#986](https://www.github.com/bioconda/bioconda-utils/issues/986))
([09d108e](https://www.github.com/bioconda/bioconda-utils/commit/09d108e796cb4fce317c475b7d26bbaea124619c))
> 
> ### Features
> 
> * Update base-glibc-*-bash images to 3.1
([#996](https://www.github.com/bioconda/bioconda-utils/issues/996))
([e7c6ca0](https://www.github.com/bioconda/bioconda-utils/commit/e7c6ca0bf7bf2a0815c694634e45d7dff0aa483a))
> 
> * Update dependencies to latest versions
([#992](https://www.github.com/bioconda/bioconda-utils/issues/992))
([8c0fe35](https://www.github.com/bioconda/bioconda-utils/commit/8c0fe3548e8087a82050d8cefcfe01e909e61c01))
> 
> ### Bug Fixes
> 
> * Pass pkg_format to container-based build
([#994](https://www.github.com/bioconda/bioconda-utils/issues/994))
([e3f23ed](https://www.github.com/bioconda/bioconda-utils/commit/e3f23ed70300d97a8f99c5bace7dbba0f559bd19))

refs:
- https://github.com/bioconda/bioconda-utils/releases/tag/v3.2.0
- https://github.com/bioconda/bioconda-utils/releases/tag/v3.1.0
- https://github.com/bioconda/bioconda-utils/releases/tag/v3.0.0
- bioconda/bioconda-recipes#48214

----
Common config changes:
- Set `pkg_format=2` (i.e., build `.conda` not `.tar.bz2`)
- Remove `defaults` channel

---------

Signed-off-by: Marcel Bargull <[email protected]>

common.sh

@@ -1,3 +1,3 @@
-BIOCONDA_UTILS_TAG=v2.15.1
+BIOCONDA_UTILS_TAG=v3.2.0
 MAMBAFORGE_VER=24.3.0-0
 MAMBAFORGE_INSTALLATION_DIR="/opt/mambaforge"

configure-conda.sh

@@ -21,11 +21,12 @@ then
 fi
 
 conda config --set always_yes yes
-conda config --add channels defaults
 conda config --add channels bioconda
 conda config --add channels conda-forge
+conda config --remove channels defaults || true
 conda config --set channel_priority strict
+conda config --set conda_build.pkg_format 2
 
 if [ ${BIOCONDA_DISABLE_BUILD_PREP:=0} == 0 ]; then
     conda config --add channels "file://${MAMBAFORGE_INSTALLATION_DIR}/conda-bld"
-fi
+fi