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53 Open 180 Closed
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Issues list

MSstats issues and refactoring documentation Improvements or additions to documentation enhancement New feature or request high-priority question Further information is requested
#493 opened Mar 10, 2025 by ypriverol
@ypriverol @daichengxin
MZML statistics including MS1 and MS2 features enhancement New feature or request high-priority
#488 opened Mar 3, 2025 by martingarridorc
@ypriverol
1
Difference bewteen quantms results and DIANN GUI results bug Something isn't working
#481 opened Feb 15, 2025 by an-altosian
@ypriverol
43
OpenMS terms for scores in CVTerms accessions not in names enhancement New feature or request
#480 opened Feb 14, 2025 by ypriverol
9
Support for different parameters (I.e. different PTMs and Enzymes) enhancement New feature or request
#478 opened Feb 5, 2025 by kai-lawsonmcdowall
TMT16plex correction_matrix is missing enhancement New feature or request
#473 opened Jan 16, 2025 by cecilia992
@ypriverol
1
NFCORE_QUANTMS:QUANTMS:LFQ:MSSTATS Missing output file(s) *.csv bug Something isn't working
#470 opened Jan 8, 2025 by Ministreliya131
2
Allowing more than one enzyme as cleavage agent enhancement New feature or request
#469 opened Jan 7, 2025 by cecilia992
6
Strange error with percolator after SAGE bug Something isn't working
#467 opened Dec 27, 2024 by ypriverol
@ypriverol
1
Chymotrypsin/P force in ComentAdapter, not supported by OpenMS bug Something isn't working
#465 opened Dec 22, 2024 by ypriverol
@ypriverol @timosachsenberg
1
run without SDRF enhancement New feature or request
#461 opened Dec 19, 2024 by p20000000
addition of tmt18plex as labelling type and Average Channels as Reference Option enhancement New feature or request
#457 opened Dec 5, 2024 by cecilia992
1
Optimisation of resources for the workflow enhancement New feature or request
#455 opened Dec 5, 2024 by ypriverol
@ypriverol @jpfeuffer @daichengxin
13
Benchmarking of DIANN versions 1.8.1 and 2.0.2. dia analysis enhancement New feature or request high-priority
#453 opened Dec 3, 2024 by daichengxin
@ypriverol @daichengxin
5
Support for timsTOF data enhancement New feature or request question Further information is requested
#440 opened Nov 17, 2024 by daichengxin
@ypriverol @timosachsenberg
@jpfeuffer @daichengxin
7
Cleanup module configs and decide on default output files enhancement New feature or request high-priority
#434 opened Nov 5, 2024 by jpfeuffer
@ypriverol @jpfeuffer @daichengxin
Support for .dia file format in quantms pipeline enhancement New feature or request
#430 opened Oct 16, 2024 by hosseinvk
3
OpenMS and frequently mass shifts in Unimod enhancement New feature or request
#411 opened Aug 20, 2024 by ypriverol
12
Benchmarking ms2rscore (deeplc, ms2pip), quantms-rescoring in quantms. enhancement New feature or request high-priority research-projects
#410 opened Aug 16, 2024 by ypriverol
9 tasks
@ypriverol @jpfeuffer @daichengxin
13
First Tasks for of improvements of OpenMS and quantms enhancement New feature or request research-projects
#393 opened Jul 31, 2024 by ypriverol
2 of 3 tasks
@ypriverol @timosachsenberg @MaLLLiYA
3
the charge min and max and missclevages are sometimes not working bug Something isn't working
#364 opened Mar 25, 2024 by ypriverol
@ypriverol @timosachsenberg
@jpfeuffer @daichengxin
3
Open-search with quantms, use cases and workflow documentation Improvements or additions to documentation enhancement New feature or request high-priority open-search sage-support
#345 opened Jan 18, 2024 by ypriverol
8 tasks
@daichengxin
1
Test the impact and how the parameter num_hits works documentation Improvements or additions to documentation enhancement New feature or request high-priority
#344 opened Jan 16, 2024 by ypriverol
@ypriverol @daichengxin
4
We should dynamically configure some of the steps depending of the experiment size. bug Something isn't working enhancement New feature or request high-priority
#340 opened Jan 12, 2024 by ypriverol
3 tasks
@ypriverol @daichengxin
2
Support for Phosphoproteomics datasets. documentation Improvements or additions to documentation enhancement New feature or request high-priority
#334 opened Jan 9, 2024 by ypriverol
10 tasks
@ypriverol
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