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FIX: Filtering in BIDSLayoutIndexer #1063

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FIX: Filtering in BIDSLayoutIndexer #1063

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5976120
Fix filtering in BIDSLayoutIndexer
alperkent May 10, 2024
3ace638
Merge branch 'bids-standard:master' into master
alperkent May 10, 2024
9b9c74e
Update index.py
alperkent May 22, 2024
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5 changes: 4 additions & 1 deletion bids/layout/index.py
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Original file line number Diff line number Diff line change
Expand Up @@ -250,6 +250,9 @@ def _index_file(self, abs_fn, entities):
m = e.match_file(bf)
if m is None and e.mandatory:
break
# Skip entities that don't match the filter
if self.filters and e.name and e.name in self.filters and m and m not in self.filters[e.name]:
continue
if m is not None:
Comment on lines +253 to 256
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@effigies effigies Jul 25, 2024

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This is the equivalent of

Suggested change
# Skip entities that don't match the filter
if self.filters and e.name and e.name in self.filters and m and m not in self.filters[e.name]:
continue
if m is not None:
if m is not None and (e.name not in self.filters or m in listify(self.filters[e.name])):

match_vals[e.name] = (e, m)

Expand All @@ -264,7 +267,7 @@ def _index_file(self, abs_fn, entities):
def _index_metadata(self):
"""Index metadata for all files in the BIDS dataset.
"""
filters = self.filters
filters = self.filters.copy()

if filters:
# ensure we are returning objects
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