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@berenslab

Berens Lab @ University of Tübingen

Department of Data Science at the Hertie Institute for AI in Brain Health, University of Tübingen

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  1. rna-seq-tsne rna-seq-tsne Public

    The art of using t-SNE for single-cell transcriptomics

    Jupyter Notebook 123 35

  2. pubmed-landscape pubmed-landscape Public

    The landscape of biomedical research

    Jupyter Notebook 116 11

  3. t-simcne t-simcne Public

    Unsupervised visualization of image datasets using contrastive learning

    Python 116 14

  4. neural_data_science neural_data_science Public

    Contains programming labs and lecture notes for the lecture "Neural Data Science"

    Jupyter Notebook 103 26

  5. uneye uneye Public

    Deep neural network for eye movement detection

    Jupyter Notebook 77 30

  6. contrastive-ne contrastive-ne Public

    Contrastive neighbor embeddings

    Jupyter Notebook 54 7

Repositories

Showing 10 of 77 repositories
  • sBNN Public

    A sparse bottleneck neural network to predict electrophysiological properties of neurons from their gene expression.

    berenslab/sBNN’s past year of commit activity
    Jupyter Notebook 4 GPL-3.0 0 0 0 Updated May 20, 2025
  • hh_sbi Public
    berenslab/hh_sbi’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated May 20, 2025
  • MorphoPy Public
    berenslab/MorphoPy’s past year of commit activity
    Jupyter Notebook 40 GPL-3.0 11 2 3 Updated May 20, 2025
  • pywarper Public

    Conformal mapping-based warping of neuronal arbor morphologies.

    berenslab/pywarper’s past year of commit activity
    Python 0 0 0 0 Updated May 20, 2025
  • skeliner Public

    A lightweight neuromorphological mesh skeletonizer.

    berenslab/skeliner’s past year of commit activity
    Python 0 0 1 0 Updated May 19, 2025
  • t-simcne Public

    Unsupervised visualization of image datasets using contrastive learning

    berenslab/t-simcne’s past year of commit activity
    Python 116 14 1 1 Updated May 19, 2025
  • llm-excess-vocab Public

    Delving into LLM-assisted writing in biomedical publications through excess vocabulary

    berenslab/llm-excess-vocab’s past year of commit activity
    Jupyter Notebook 36 MIT 6 1 0 Updated May 15, 2025
  • contrastive-graphs Public
    berenslab/contrastive-graphs’s past year of commit activity
    Python 0 0 0 0 Updated May 14, 2025
  • retinal-rl Public

    Testing theories about retinal coding in reinforcement learning environments

    berenslab/retinal-rl’s past year of commit activity
    Python 0 AGPL-3.0 1 24 4 Updated May 13, 2025
  • ne_spectrum_scRNAseq Public
    berenslab/ne_spectrum_scRNAseq’s past year of commit activity
    Jupyter Notebook 2 MIT 1 1 0 Updated May 5, 2025
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