The bulk of this repo is JustOrthologs code ported to python 3 for purposes of testing and comparison with research.
All code in python2 can be found at https://github.com/ridgelab/JustOrthologs.
Miller JB, Pickett BD, Ridge PG. JustOrthologs: a fast, accurate and user-friendly ortholog identification algorithm. Bioinformatics. 2019 Feb 15;35(4):546-552. doi: 10.1093/bioinformatics/bty669. PMID: 30084941; PMCID: PMC6378933.