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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,67 @@ | ||
| name: R Package Checks and Coverage | ||
|
|
||
| on: | ||
| push: | ||
| pull_request: | ||
| workflow_dispatch: | ||
|
|
||
| jobs: | ||
| check: | ||
| runs-on: ${{ matrix.config.os }} | ||
|
|
||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| config: | ||
| - {os: windows-latest, r: 'release'} | ||
| - {os: windows-latest, r: 'devel'} | ||
| - {os: macOS-latest, r: 'release'} | ||
| - {os: ubuntu-latest, r: 'release'} | ||
| - {os: ubuntu-latest, r: 'devel'} | ||
|
|
||
| name: ${{ matrix.config.os }} (R ${{ matrix.config.r }}) | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - uses: r-lib/actions/setup-r@v2 | ||
| with: | ||
| r-version: ${{ matrix.config.r }} | ||
| - name: Install dependencies | ||
| run: | | ||
| Rscript -e "install.packages('remotes')" | ||
| Rscript -e "remotes::install_deps(dependencies = TRUE)" | ||
| - name: Install system dependencies (Ubuntu only) | ||
| if: runner.os == 'Linux' | ||
| run: sudo apt-get install -y libcurl4-openssl-dev libssl-dev libxml2-dev libfreetype6-dev libfontconfig1-dev libharfbuzz-dev libfribidi-dev libpng-dev libjpeg-dev libtiff5-dev | ||
| - name: Setup Check | ||
| run: | | ||
| Rscript -e "install.packages('rcmdcheck')" | ||
| mkdir -p "check-${{ matrix.config.os }}" | ||
| - name: Check | ||
| run: | | ||
| Rscript -e "rcmdcheck::rcmdcheck(args = '--no-manual', error_on = 'error', check_dir = 'check-${{ matrix.config.os }}')" | ||
| - name: Setup Test | ||
| run: | | ||
| mkdir -p "test-results-${{ matrix.config.os }}" | ||
| Rscript -e "install.packages('testthat')" | ||
| Rscript -e "install.packages('devtools')" | ||
| Rscript -e "devtools::install('.', dependencies = TRUE)" | ||
| - name: Test | ||
| run: | | ||
| Rscript -e "testthat::test_dir('tests', reporter = testthat::SummaryReporter)" | ||
| - name: Code Coverage | ||
| if: matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'release' | ||
| run: | | ||
| Rscript -e "install.packages('covr')" | ||
| Rscript -e "covr::codecov()" | ||
| - name: Upload check results | ||
| if: always() | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: R-CMD-check-results-${{ matrix.config.os }}-${{ matrix.config.r }} | ||
| path: check-* | ||
| - name: Upload test results | ||
| if: always() | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: R-test-results-${{ matrix.config.os }}-${{ matrix.config.r }} | ||
| path: test-results-* |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,98 @@ | ||
| name: Reverse Dependency Check | ||
|
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| on: | ||
| workflow_dispatch: | ||
|
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| jobs: | ||
| revdep_check: | ||
| runs-on: ubuntu-latest | ||
|
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| name: Reverse check ${{ inputs.which }} dependents | ||
|
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| steps: | ||
| - name: Checkout repository | ||
| uses: actions/checkout@v4 | ||
|
|
||
| - name: Set up R | ||
| uses: r-lib/actions/setup-r@v2 | ||
| with: | ||
| r-version: 'release' | ||
|
|
||
| - name: Install system dependencies | ||
| run: | | ||
| sudo apt-get update | ||
| sudo apt-get install -y \ | ||
| libcurl4-openssl-dev \ | ||
| libssl-dev \ | ||
| libxml2-dev \ | ||
| libfreetype6-dev \ | ||
| libfontconfig1-dev \ | ||
| libharfbuzz-dev \ | ||
| libfribidi-dev \ | ||
| libpng-dev \ | ||
| libjpeg-dev \ | ||
| libtiff5-dev \ | ||
| gfortran \ | ||
| libblas-dev \ | ||
| liblapack-dev | ||
| - name: Install R dependencies | ||
| run: | | ||
| Rscript -e "install.packages(c('remotes', 'revdepcheck', 'testthat', 'rcmdcheck'))" | ||
| Rscript -e "remotes::install_deps(dependencies = TRUE)" | ||
| - name: Setup Reverse Dependency Check | ||
| run: | | ||
| Rscript -e " | ||
| rev_deps <- tools::package_dependencies( | ||
| packages = 'ptetools', | ||
| db = available.packages(), | ||
| reverse = TRUE | ||
| ) | ||
| rev_deps <- rev_deps[['ptetools']] | ||
| cat('Testing the following reverse dependencies:', rev_deps, '\n') | ||
| for (pkg in rev_deps) { | ||
| cat('Installing package:', pkg, '\n') | ||
| install.packages(pkg, dependencies = TRUE) | ||
| } | ||
| " | ||
| - name: Reverse Dependency Check | ||
| run: | | ||
| Rscript -e " | ||
| rev_deps <- tools::package_dependencies( | ||
| packages = 'BMisc', | ||
| db = available.packages(), | ||
| reverse = TRUE | ||
| ) | ||
| rev_deps <- rev_deps[['BMisc']] | ||
| dir.create('revdep_tarballs', showWarnings = FALSE) | ||
| for (pkg in rev_deps) { | ||
| cat('Checking package:', pkg, '\n') | ||
| # Download the source tarball | ||
| tarball <- tryCatch({ | ||
| tarball_info <- download.packages(pkg, destdir = 'revdep_tarballs', type = 'source') | ||
| # Extract the correct tarball file path | ||
| tarball_path <- tarball_info[, 2] # The second column contains the file path | ||
| tarball_path # Return the correct path | ||
| }, error = function(e) { | ||
| cat('Error downloading source tarball for package:', pkg, '\n', conditionMessage(e), '\n') | ||
| next | ||
| }) | ||
| pkg_path <- find.package(pkg, quiet = TRUE) | ||
| tryCatch({ | ||
| rcmdcheck::rcmdcheck(tarball, error_on = 'never', args = '--no-manual') | ||
| }, error = function(e) { | ||
| cat('Error checking package:', pkg, '\n', conditionMessage(e), '\n') | ||
| }) | ||
| } | ||
| " | ||
| - name: Upload Results | ||
| if: always() | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: Reverse-Dependency-Check-Results | ||
| path: revdep/ |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -9,4 +9,4 @@ | |
| library(testthat) | ||
| library(ptetools) | ||
|
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| test_check("ptetool") | ||
| test_check("ptetools") | ||
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