R Package Checks and Coverage

pte2 renamed pte and default, removed old version of pte, updated doc… #3

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Job	Run time
windows-latest (R release)	10m 8s
windows-latest (R devel)	15m 0s
macOS-latest (R release)	7m 33s
ubuntu-latest (R release)	40m 54s
ubuntu-latest (R devel)	34m 36s
	1h 48m 11s