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Added initial CaeNDR database specs #2503

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48 changes: 48 additions & 0 deletions datasets/caendr.yaml
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Name: Caenorabditis Diversity Natural Resource
Description: The Caenorhabditis Natural Diversity Resource (CaeNDR) is a data repository and analysis hub of wild strains of selfing Caenhorabditis species C. elegans, C. briggsae, and C. tropicalis from around the world to facilitate discovery of genetic variation across all three species through genome-wide association mappings to correlate genotype with phenotype and identify genetic variation underlying quantitative traits.
Documentation: https://github.com/awslabs/open-data-docs/tree/main/docs/caendr
Contact: https://caendr.org/about/contact-us
ManagedBy: The Andersen Lab, Johns Hopkins University, Baltimore, MD, USA
UpdateFrequency: Annually
Tags:
- aws-pds
- bam
- bioinformatics
- biology
- Caenorhabditis elegans
- fastq
- gatk-sv
- genetic maps
- genome
- genome wide association study
- genomic
- short read sequencing
- variant annotation
- vcf
License: All CaeNDR data is available under the MIT License. Use of the data should be cited in the usual way, with current details available at https://caendr.org/#citationModal
Resources:
- Description: https://caendr.org/faq
ARN: arn:aws:s3:::caendr
Region: us-east-1
Type: S3 Bucket
DataAtWork:
Tutorials:
- Title: Data Releases - C. elegans
URL: https://caendr.org/data/data-release/c-elegans/latest
AuthorName: Erik Andersen
- Title: Data Releases - C. briggsae
URL: https://caendr.org/data/data-release/c-briggsae/latest
AuthorName: Erik Andersen
- Title: Data Releases - C. tropicalis
URL: https://caendr.org/data/data-release/c-tropicalis/latest
AuthorName: Erik Andersen
- Title: FAQ - AWS API
URL: https://caendr.org/faq
AuthorName: Erik Andersen
Publications:
- Title: CaeNDR, the Ceanorhabditis Natural Diversity Resource
URL: https://doi.org/10.1093/nar/gkad887
AuthorName: Crombie TA, McKeown R, Moya ND, Evans KS, Widmayer SJ, LaGrassa V, et al.
ADXCategories:
- Resources Data
- Healthcare & Life Sciences Data