exec: Building DAG of jobs... Your conda installation is not configured to use strict channel priorities. This is however crucial for having robust and correct environments (for details, see https://conda-forge.org/docs/user/tipsandtricks.html). Please consider to configure strict priorities by executing 'conda config --set channel_priority strict'. Creating conda environment /home/runner/.local/lib/python3.10/site-packages/showyourwork/workflow/envs/tectonic.yml... Downloading and installing remote packages. Environment for /home/runner/.local/lib/python3.10/site-packages/showyourwork/workflow/envs/tectonic.yml created (location: .snakemake/conda/2857e9b36a3a5ff7fd13dd41aa527eae_) Using shell: /usr/bin/bash Provided cores: 1 (use --cores to define parallelism) Rules claiming more threads will be scaled down. Job stats: job count min threads max threads --------------------- ------- ------------- ------------- syw__main 1 1 1 syw__preprocess 1 1 1 syw__preprocess_setup 1 1 1 syw__preprocess_xml 1 1 1 total 4 1 1 Select jobs to execute... [Thu Nov 23 12:58:44 2023] Job 3: Preprocess: Setting up... Reason: Missing output files: /home/runner/work/msd-errors/msd-errors/.showyourwork/preprocess/showyourwork-stamp.pdf, /home/runner/work/msd-errors/msd-errors/.showyourwork/preprocess/showyourwork-logo.pdf, /home/runner/work/msd-errors/msd-errors/.showyourwork/preprocess/showyourwork.otf, /home/runner/work/msd-errors/msd-errors/.showyourwork/preprocess/showyourwork.tex, /home/runner/work/msd-errors/msd-errors/.showyourwork/preprocess/ms.tex, /home/runner/work/msd-errors/msd-errors/.showyourwork/preprocess/lineno.sty, /home/runner/work/msd-errors/msd-errors/.showyourwork/preprocess/listofitems.tex, /home/runner/work/msd-errors/msd-errors/.showyourwork/preprocess/xstring.tex, /home/runner/work/msd-errors/msd-errors/.showyourwork/preprocess/xstring.sty; Updated input files: zenodo.yml, src/tex/ms.tex, showyourwork.yml Preprocess: Setting up... [Thu Nov 23 12:58:44 2023] Finished job 3. 1 of 4 steps (25%) done Select jobs to execute... [Thu Nov 23 12:58:44 2023] Job 2: Preprocess: Generating XML tree... Reason: Missing output files: /home/runner/work/msd-errors/msd-errors/.showyourwork/preprocess/showyourwork.xml; Input files updated by another job: /home/runner/work/msd-errors/msd-errors/.showyourwork/preprocess/showyourwork-stamp.pdf, /home/runner/work/msd-errors/msd-errors/.showyourwork/preprocess/showyourwork-logo.pdf, /home/runner/work/msd-errors/msd-errors/.showyourwork/preprocess/showyourwork.otf, /home/runner/work/msd-errors/msd-errors/.showyourwork/preprocess, /home/runner/work/msd-errors/msd-errors/.showyourwork/preprocess/ms.tex, /home/runner/work/msd-errors/msd-errors/.showyourwork/preprocess/showyourwork.tex, /home/runner/work/msd-errors/msd-errors/.showyourwork/preprocess/lineno.sty, /home/runner/work/msd-errors/msd-errors/.showyourwork/preprocess/listofitems.tex, /home/runner/work/msd-errors/msd-errors/.showyourwork/preprocess/xstring.tex, /home/runner/work/msd-errors/msd-errors/.showyourwork/preprocess/xstring.sty Preprocess: Generating XML tree... Activating conda environment: .snakemake/conda/2857e9b36a3a5ff7fd13dd41aa527eae_ warning: ms.tex:291: Underfull /hbox (badness 2393) in paragraph at lines 287--291 warning: ms.tex:430: Underfull /hbox (badness 1137) in paragraph at lines 427--430 warning: ms.tex:446: Underfull /hbox (badness 2096) in paragraph at lines 441--446 warning: ms.tex:456: Underfull /hbox (badness 1019) in paragraph at lines 451--456 warning: ms.tex:500: Underfull /hbox (badness 2334) in paragraph at lines 497--500 warning: ms.tex:651: Underfull /hbox (badness 3000) in paragraph at lines 650--651 warning: ms.tex:720: Overfull /hbox (6.0491pt too wide) detected at line 720 warning: warnings were issued by the TeX engine; use --print and/or --keep-logs for details. wa