Go to the folder where you want to install applicake $ cd /install_dir/
make applicake available to your python environment by adding the root folder to your pytonpath $ vim ~/.bashrc export PYTHONPATH=/install_dir/applicake-master/applicake/:/install_dir/applicake-master/appliapps/:$PYTHONPATH
for testing sucessful install try $ /install_dir/applicake-master/executables/ruffus/echoWF.py
for testing sucessful install try python.exe .\appliapps\examples\cp.py --FILE "test"
https://github.com/iracooke/protk
On ubuntu you also need to install:
apt-get install libxml2-dev libxslt1-dev python-dev