This is a QIIME 2 plugin to analyze metabolomics data that utilizes GNPS.
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The manifest file specifies the location of the files that will be processed by the metabolomicsgnps plugin. It is a .CSV formatted table that contains two columns (See Figure X below). The first column indicates the ‘sample-id’ for each file, while the second column indicates its corresponding relative file path (relative to where qiime commands are called). The gnps-clustering and the mzmine2-clustering tools are using both the same manifest file.
Figure X. View of the manifest file (.CSV format). The first column indicates the ‘sample-id’ for each file, while the second column indicates its corresponding relative file path. The example file can be downloaded here.
