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[DC-3893] Add note and note_nlp to legacy deid #1880

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[DC-3893] Add note and note_nlp to legacy deid #1880

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20 changes: 20 additions & 0 deletions data_steward/deid/config/ids/tables/note.json
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Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
{
"suppress": [
{
"comment": "removing rows containing values along the following ICD9CM and ICD10CM parent codes using a lookup table for all concept_ids to be suppressed for note_type_concept_id",
"on": " exists (select * from `:idataset.note` as record2 where note.note_id = record2.note_id and note_type_concept_id in (select concept_id from `:idataset._concept_ids_suppression`)) "
},
{
"comment": "removing rows containing values along the following ICD9CM and ICD10CM parent codes using a lookup table for all concept_ids to be suppressed for note_class_concept_id",
"on": " exists (select * from `:idataset.note` as record2 where note.note_id = record2.note_id and note_class_concept_id in (select concept_id from `:idataset._concept_ids_suppression`)) "
},
{
"comment": "removing rows containing values along the following ICD9CM and ICD10CM parent codes using a lookup table for all concept_ids to be suppressed for encoding_concept_id",
"on": " exists (select * from `:idataset.note` as record2 where note.note_id = record2.note_id and encoding_concept_id in (select concept_id from `:idataset._concept_ids_suppression`)) "
},
{
"comment": "removing rows containing values along the following ICD9CM and ICD10CM parent codes using a lookup table for all concept_ids to be suppressed for language_concept_id",
"on": " exists (select * from `:idataset.note` as record2 where note.note_id = record2.note_id and language_concept_id in (select concept_id from `:idataset._concept_ids_suppression`)) "
}
]
}
12 changes: 12 additions & 0 deletions data_steward/deid/config/ids/tables/note_nlp.json
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Original file line number Diff line number Diff line change
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{
"suppress": [
{
"comment": "removing rows containing values along the following ICD9CM and ICD10CM parent codes using a lookup table for all concept_ids to be suppressed for note_nlp_concept_id",
"on": " exists (select * from `:idataset.note_nlp` as record2 where note_nlp.note_nlp_id = record2.note_nlp_id and note_nlp_concept_id in (select concept_id from `:idataset._concept_ids_suppression`)) "
},
{
"comment": "removing rows containing values along the following ICD9CM and ICD10CM parent codes using a lookup table for all concept_ids to be suppressed for note_nlp_source_concept_id",
"on": " exists (select * from `:idataset.note_nlp` as record2 where note_nlp.note_nlp_id = record2.note_nlp_id and note_nlp_source_concept_id in (select concept_id from `:idataset._concept_ids_suppression`)) "
}
]
}