UniProt JSON to YAML Conversion with LinkML

In bioinformatics and data modeling, LinkML (Linked Data Modeling Language) is a powerful language used to define, validate, and transform structured data.

LinkML allows data models to be written as YAML schemas, which can then be used to validate or convert JSON data into YAML format for easier reading and sharing.

How It Works

This process typically involves the following steps:

1. Define a LinkML schema: Use YAML to describe the structure of the data (e.g., attributes of a UniProt protein entry).
2. Prepare JSON instance data: Containing the data to be converted.
3. Use LinkML tools: Validate and convert the JSON data into YAML format according to the schema.

Example Command

linkml-validate input.json output.yaml

## Challeges ##
linkml-convert input.json output.yaml