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modules/algorithms/src/test/resources Expand file tree Collapse file tree Original file line number Diff line number Diff line change 1+ forcefield amoeba-bio-2018-cphmd
2+
3+ esv.friction 0.5
4+ pH.Windows 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50
5+ esv.special.residues 44 45 46 72
6+ esv.special.residues.pka 3.1 4.0 3.5 4.4
7+ guess.titration.state true
8+
9+ ASH.titration.bias.magnitude 4.0
10+ ASH.tautomer.bias.magnitude 2.0
11+ ASH.cubic 12.730
12+ ASH.quadratic -107.430
13+ ASH.linear 166.369
14+ ASH1toASH2.quadratic -35.305
15+ ASH1toASH2.linear 35.305
16+
17+ HIS.titration.bias.magnitude 6.0
18+ HIS.tautomer.bias.magnitude 4.0
19+ HID.cubic 0.0
20+ HID.quadratic -64.317
21+ HID.linear 30.35
22+ HIE.cubic 0.0
23+ HIE.quadratic -62.931
24+ HIE.linear 32.00
25+ HIDtoHIE.cubic 0.0
26+ HIDtoHIE.quadratic -36.83
27+ HIDtoHIE.linear 34.325
28+
29+ GLH.titration.bias.magnitude 4.0
30+ GLH.tautomer.bias.magnitude 2.0
31+ GLH.cubic 28.024
32+ GLH.quadratic -131.270
33+ GLH.linear 189.980
34+ GLH1toGLH2.quadratic -29.395
35+ GLH1toGLH2.linear 29.395
36+
37+ LYS.titration.bias.magnitude 4.0
38+ LYS.cubic 6.752
39+ LYS.quadratic -78.804
40+ LYS.linear 26.894
41+
42+ CYS.titration.bias.magnitude 4.0
43+ CYS.cubic 44.247
44+ CYS.quadratic -183.990
45+ CYS.linear 226.710
46+
47+ vdw-lambda-alpha 0.0
48+ vdw-lambda-exponent 1.0
49+
50+ permanent-lambda-exponent 1.0
51+ permanent-lambda-start 0.0
52+ permanent-lambda-alpha 0.0
53+ polarization-lambda-exponent 1.0
54+ polarization-lambda-start 0.0
55+
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