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Added Villin headpiece protein to resources directory for usage in pH unit tests that will be implemented.
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Lines changed: 55 additions & 0 deletions
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forcefield amoeba-bio-2018-cphmd
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esv.friction 0.5
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pH.Windows 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50
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esv.special.residues 44 45 46 72
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esv.special.residues.pka 3.1 4.0 3.5 4.4
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guess.titration.state true
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ASH.titration.bias.magnitude 4.0
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ASH.tautomer.bias.magnitude 2.0
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ASH.cubic 12.730
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ASH.quadratic -107.430
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ASH.linear 166.369
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ASH1toASH2.quadratic -35.305
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ASH1toASH2.linear 35.305
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HIS.titration.bias.magnitude 6.0
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HIS.tautomer.bias.magnitude 4.0
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HID.cubic 0.0
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HID.quadratic -64.317
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HID.linear 30.35
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HIE.cubic 0.0
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HIE.quadratic -62.931
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HIE.linear 32.00
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HIDtoHIE.cubic 0.0
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HIDtoHIE.quadratic -36.83
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HIDtoHIE.linear 34.325
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GLH.titration.bias.magnitude 4.0
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GLH.tautomer.bias.magnitude 2.0
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GLH.cubic 28.024
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GLH.quadratic -131.270
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GLH.linear 189.980
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GLH1toGLH2.quadratic -29.395
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GLH1toGLH2.linear 29.395
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LYS.titration.bias.magnitude 4.0
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LYS.cubic 6.752
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LYS.quadratic -78.804
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LYS.linear 26.894
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CYS.titration.bias.magnitude 4.0
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CYS.cubic 44.247
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CYS.quadratic -183.990
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CYS.linear 226.710
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vdw-lambda-alpha 0.0
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vdw-lambda-exponent 1.0
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permanent-lambda-exponent 1.0
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permanent-lambda-start 0.0
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permanent-lambda-alpha 0.0
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polarization-lambda-exponent 1.0
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polarization-lambda-start 0.0
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