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details: Cell
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year: 2011
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# 2010
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- title: "Network-free inference of knockout effects in yeast"
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authors: "T. Peleg*, N. Yosef*, E. Ruppin, and R. Sharan."
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details: PLoS Computational Biology
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year: 2010
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- title: "Prediction of Phenotype Information from Genotype Data"
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authors: "N.Yosef, J. Gramm, Q. Wang, W.S. Noble, R. Karp, and R. Sharan."
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details: Communications in Information and Systems
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year: 2010
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- title: "A Systems Level Strategy for Analyzing the Cell Death Network: implications in exploring the apoptosis/ autophagy connection"
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authors: "E. Zalckvar, N. Yosef, S. Reef, R. Sharan, E. Ruppin, and A. Kimchi."
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details: Cell Death and Differentiation
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year: 2010
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doi: 10.1038/cdd.2010.7
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- title: "Transcription Regulation by CHIP/LDB Complexes"
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authors: "R. Bronstein, L. Levkovitz, N. Yosef, E. Ruppin, R. Sharan, He. Westphal, B. Oliver, D. Segal."
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details: PLoS Genetics
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year: 2010
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- title: "A novel HMM-based method for detecting enriched transcription factor binding sites reveals RUNX3 as a potential target in pancreatic cancer biology"
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authors: "L. Levkovitz, N. Yosef, MC. Gershengorn, E. Ruppin, R. Sharan and Y. Oron."
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details: PLoS ONE
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year: 2010
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# 2009 and earlier
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- title: "Toward Accurate Reconstruction of Functional Protein Networks"
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authors: "N.Yosef\\*, L. ungar\\*, E. Zalckvar, A.Kimchi, M.Kupeic, E. Ruppin and R. Sharan."
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details: Molecular Systems Biology
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year: 2009
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- title: "A Complex-Centric View of Protein Network Evolution"
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authors: "N.Yosef, M.Kupeic, E. Ruppin and R. Sharan."
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details: Nucleic Acids Research
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doi: 10.1093/nar/gkp414
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year: 2009
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- title: "A genome-wide screen for essential yeast genes that affect telomere length maintenance"
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authors: "L. Ungar\\*, N.Yosef\\*, Y. Sela, R. Sharan, E. Ruppin, M. Kupiec."
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details: Nucleic Acids Research
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doi: 10.1093/nar/gkp259
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year: 2009
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- title: "Metabolic environmental modeling predicts ecological strategies for bacterial growth"
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authors: "S. Freilich, A. Kreimer, E. Borenstein, N.Yosef, R. Sharan, U. Gophna, E. Ruppin."
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details: Genome Biology
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doi: 10.1186/gb-2009-10-6-r61
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year: 2009
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- title: "Cross-species Analysis of Protein-protein Interaction Networks"
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authors: "N.Yosef, E. Ruppin and R. Sharan."
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details: "In Protein-protein interactions and networks: identification analysis and prediction, Panchenko& Przytycka (ed) pp 163-186. Springer"
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year: 2008
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- title: "Improved Network-based Identification of Protein Orthologs"
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authors: "N.Yosef, R. Sharan and W. S. Noble."
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details: Bioinformatics 24 (ECCB 2008)
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year: 2008
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- title: "From sequence to structure to networks"
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authors: "N. Yosef, L. Käll."
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details: Genome Biology
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year: 2008
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- title: "A Supervised Approach for Identifying Discriminating Genotype Patterns and its Application to Breast Cancer Data"
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authors: "N.Yosef, Z.Yakhini, A.Tsalenko, E.Ruppin and R.Sharan"
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details: Bioinformatics 23 (ECCB 2006)
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year: 2007
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- title: "Medical sequencing at the extremes of human body mass"
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authors: "N. Ahituv, N. Kavaslar, W. Schackwitz, A. Ustaszewska, J. Martin, S. Hébert, H. Doelle, B. Ersoy, G. Kryukov, S. Schmidt, N. Yosef, E. Ruppin, R. Sharan, C. Vaisse, S. Sunyaev, R. Dent, J. Cohen, R. McPherson, and L.A. Pennacchio."
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details: American Journal of Human Genetics
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year: 2007
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- title: "Inferring Functional Pathways from Multi-Perturbation Data"
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authors: "N. Yosef, A. Kaufman and E. Ruppin"
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details: Bioinformatics (ISMB 2006)
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year: 2006

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