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@YosefLab

Yosef Lab

Department of Systems Immunology, Weizmann Institute of Science

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  1. VISION VISION Public

    Signature Analysis and Visualization for Single-Cell RNA-seq

    R 172 33

  2. Cassiopeia Cassiopeia Public

    A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

    Python 93 28

  3. Compass Compass Public

    In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

    Python 112 32

  4. Hotspot Hotspot Public

    Python 122 16

  5. epitome epitome Public

    Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility

    Python 11 4

  6. popV popV Public

    Python 82 17

Repositories

Showing 10 of 64 repositories
  • scib-metrics Public

    Accelerated, Python-only, single-cell integration benchmarking metrics

    YosefLab/scib-metrics’s past year of commit activity
    Python 68 BSD-3-Clause 17 12 2 Updated Aug 19, 2025
  • velovi Public
    YosefLab/velovi’s past year of commit activity
    Python 40 BSD-3-Clause 7 8 2 Updated Aug 18, 2025
  • treedata Public

    anndata with trees

    YosefLab/treedata’s past year of commit activity
    Python 6 BSD-3-Clause 3 0 1 Updated Aug 18, 2025
  • popV Public
    YosefLab/popV’s past year of commit activity
    Python 82 MIT 17 6 3 Updated Aug 18, 2025
  • YosefLab/yoseflab.github.io’s past year of commit activity
    JavaScript 3 MIT 9 0 0 Updated Aug 15, 2025
  • pycea Public

    scverse lineage tracing analysis toolkit

    YosefLab/pycea’s past year of commit activity
    Python 0 BSD-3-Clause 1 0 0 Updated Jul 31, 2025
  • Cassiopeia Public

    A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

    YosefLab/Cassiopeia’s past year of commit activity
    Python 93 MIT 28 23 (3 issues need help) 10 Updated Jul 26, 2025
  • VIVS Public

    Calibrated Identification of Feature Dependencies in Single-cell Multiomics

    YosefLab/VIVS’s past year of commit activity
    Python 5 BSD-3-Clause 1 0 0 Updated Jul 8, 2025
  • mrvi_archive Public

    Multi-resolution Variational Inference

    YosefLab/mrvi_archive’s past year of commit activity
    Python 23 BSD-3-Clause 8 2 1 Updated Jun 23, 2025
  • scVI-data Public

    datasets for scVI

    YosefLab/scVI-data’s past year of commit activity
    3 1 0 0 Updated May 21, 2025

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