YeoLab · ckmah · Feb 24, 2025 · Feb 24, 2025 · Feb 25, 2025 · Feb 25, 2025
diff --git a/.cursor/rules/python-environment.mdc b/.cursor/rules/python-environment.mdc
@@ -0,0 +1,4 @@
+---
+description: Use the conda environment "bento-benchmarks" when running python and notebook scripts.
+alwaysApply: false
+---
diff --git a/.gitignore b/.gitignore
@@ -146,4 +146,5 @@ requirements-dev.lock
 profile.html
 profile.json
 
-notebooks/
+notebooks/
+uv.lock
diff --git a/benchmark_20250715_054017-distance-benchmarks.svg b/benchmark_20250715_054017-distance-benchmarks.svg
diff --git a/benchmark_20250716_013043-polarity-benchmarks.svg b/benchmark_20250716_013043-polarity-benchmarks.svg
diff --git a/benchmark_20250716_015649-compare-measures-benchmark.svg b/benchmark_20250716_015649-compare-measures-benchmark.svg
diff --git a/benchmark_20250717_050826.svg b/benchmark_20250717_050826.svg
diff --git a/benchmarks/benchmark_20250711_071602-distance-benchmarks.svg b/benchmarks/benchmark_20250711_071602-distance-benchmarks.svg
diff --git a/benchmarks/benchmark_20250711_071935-polarity-benchmarks.svg b/benchmarks/benchmark_20250711_071935-polarity-benchmarks.svg
diff --git a/benchmarks/benchmark_20250711_072423-moments-benchmarks.svg b/benchmarks/benchmark_20250711_072423-moments-benchmarks.svg
diff --git a/benchmarks/benchmark_20250711_073051-ripley-benchmarks.svg b/benchmarks/benchmark_20250711_073051-ripley-benchmarks.svg
diff --git a/benchmarks/benchmark_scaling_analysis.pdf b/benchmarks/benchmark_scaling_analysis.pdf
diff --git a/benchmarks/benchmark_scaling_analysis.png b/benchmarks/benchmark_scaling_analysis.png
diff --git a/benchmarks/benchmark_summary.pdf b/benchmarks/benchmark_summary.pdf
diff --git a/benchmarks/benchmark_summary.png b/benchmarks/benchmark_summary.png
diff --git a/benchmarks/distance_benchmarks.json b/benchmarks/distance_benchmarks.json
@@ -0,0 +1,192 @@
+{
+    "machine_info": {
+        "node": "clarencesair15.lan",
+        "processor": "arm",
+        "machine": "arm64",
+        "python_compiler": "Clang 18.1.8 ",
+        "python_implementation": "CPython",
+        "python_implementation_version": "3.10.16",
+        "python_version": "3.10.16",
+        "python_build": [
+            "main",
+            "Dec  5 2024 14:20:01"
+        ],
+        "release": "25.0.0",
+        "system": "Darwin",
+        "cpu": {
+            "python_version": "3.10.16.final.0 (64 bit)",
+            "cpuinfo_version": [
+                9,
+                0,
+                0
+            ],
+            "cpuinfo_version_string": "9.0.0",
+            "arch": "ARM_8",
+            "bits": 64,
+            "count": 8,
+            "arch_string_raw": "arm64",
+            "brand_raw": "Apple M2"
+        }
+    },
+    "commit_info": {
+        "id": "0c7ffe4e7b5e034359cae64e42fb8fd8368a15d7",
+        "time": "2025-06-21T19:36:51-07:00",
+        "author_time": "2025-06-21T19:36:51-07:00",
+        "dirty": true,
+        "project": "bento-tools",
+        "branch": "daskify-features"
+    },
+    "benchmarks": [
+        {
+            "group": "distance-benchmarks",
+            "name": "test_benchmark_distance_stats[small]",
+            "fullname": "tests/_test_measure_points.py::TestMeasurePoints::test_benchmark_distance_stats[small]",
+            "params": {
+                "test_data": "small"
+            },
+            "param": "small",
+            "extra_info": {
+                "dataset": "small",
+                "shapes": 100,
+                "points": 10000
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+            "options": {
+                "disable_gc": false,
+                "timer": "perf_counter",
+                "min_rounds": 5,
+                "max_time": 1.0,
+                "min_time": 5e-06,
+                "warmup": false
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+                "rounds": 10,
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+        {
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+            "name": "test_benchmark_distance_stats[medium]",
+            "fullname": "tests/_test_measure_points.py::TestMeasurePoints::test_benchmark_distance_stats[medium]",
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+                "points": 500000
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+            "name": "test_benchmark_distance_stats[large]",
+            "fullname": "tests/_test_measure_points.py::TestMeasurePoints::test_benchmark_distance_stats[large]",
+            "params": {
+                "test_data": "large"
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+            "param": "large",
+            "extra_info": {
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+                "shapes": 20000,
+                "points": 2000000
+            },
+            "options": {
+                "disable_gc": false,
+                "timer": "perf_counter",
+                "min_rounds": 5,
+                "max_time": 1.0,
+                "min_time": 5e-06,
+                "warmup": false
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+    ],
+    "datetime": "2025-07-11T07:19:26.144016+00:00",
+    "version": "5.1.0"
+}
diff --git a/benchmarks/distance_benchmarks_plot.png b/benchmarks/distance_benchmarks_plot.png