test: specify the latest miniconda; #227
Workflow file for this run
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| name: Daily Testing | |
| on: | |
| schedule: | |
| # https://crontab.guru. Run everyday at 0:00AM UTC, i.e. 08:00AM Beijing, i.e. 08:00PM Montreal (summer time) | |
| - cron: "0 0 * * *" | |
| push: | |
| branches: | |
| - temp_test_branch # if in need, create such a temporary branch to test some functions | |
| jobs: | |
| Daily-testing: | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-latest, windows-latest, macOS-latest ] | |
| python-version: [ "3.8", "3.11" ] | |
| pytorch-version: ["2.3.0"] | |
| steps: | |
| - name: Check out the repo code | |
| uses: actions/checkout@v3 | |
| - name: Set up Conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniconda-version: "latest" | |
| activate-environment: pypots | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: requirements/conda_env.yml | |
| auto-activate-base: false | |
| - name: Fetch the test environment details | |
| run: | | |
| which python | |
| conda info | |
| conda list | |
| - name: Test with pytest | |
| run: | | |
| # run tests separately here due to Segmentation Fault in test_clustering when run all in | |
| # one command with `pytest` on MacOS. Bugs not caught, so this is a trade-off to avoid SF. | |
| python tests/global_test_config.py | |
| rm -rf testing_results && rm -rf tests/__pycache__ && rm -rf tests/*/__pycache__ | |
| python -m pytest -rA tests/classification/* -s -n auto --cov=pypots --dist=loadgroup --cov-config=.coveragerc | |
| python -m pytest -rA tests/imputation/* -s -n auto --cov=pypots --cov-append --dist=loadgroup --cov-config=.coveragerc | |
| python -m pytest -rA tests/clustering/* -s -n auto --cov=pypots --cov-append --dist=loadgroup --cov-config=.coveragerc | |
| python -m pytest -rA tests/forecasting/* -s -n auto --cov=pypots --cov-append --dist=loadgroup --cov-config=.coveragerc | |
| python -m pytest -rA tests/optim/* -s -n auto --cov=pypots --cov-append --dist=loadgroup --cov-config=.coveragerc | |
| python -m pytest -rA tests/data/* -s -n auto --cov=pypots --cov-append --dist=loadgroup --cov-config=.coveragerc | |
| python -m pytest -rA tests/utils/* -s -n auto --cov=pypots --cov-append --dist=loadgroup --cov-config=.coveragerc | |
| python -m pytest -rA tests/cli/* -s -n auto --cov=pypots --cov-append --dist=loadgroup --cov-config=.coveragerc | |
| - name: Generate the LCOV report | |
| run: | | |
| python -m coverage lcov | |
| - name: Submit the report | |
| uses: coverallsapp/github-action@master | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| path-to-lcov: 'coverage.lcov' |