CHIKVnext v5.1

This release contains automated lineage designation to CHIKVnext v5.0 data

CHIKVnext v5.0

This release features 1398 CHIKV isolates, based on an NCBI Genbank dump downloaded on 20221214.

CHIKVnext v4.0

This release contains automated lineage designation

CHIKVnext v3.0

This release is based on an NCBI Genbank dump downloaded on 2021-08-07, featuring 1185 full-length CHIKV genomes.

CHIKVnext v2.0

This release is based on an NCBI dump of all full-length CHIKV genomes obtained 2021-02-12.

CHIKVnext v1.0

This release covers the Nextstrain CHIKV community build referenced in the paper:

Spicher, T.; Delitz, M.; de Bernardi Schneider, A.; Wolfinger, M.T. Dynamic Molecular Epidemiology Reveals Lineage-Associated Single-Nucleotide Variants That Alter RNA Structure in Chikungunya Virus. Genes (2021) 12, 239. https://doi.org/10.3390/genes12020239

It is based on an NCBI dump of all full-length CHIKV genomes obtained 2020-10-23.