Greetings!
You can find the code for our manuscript in the repo.
Our interactive app will be hosted here: https://ucarlab.github.io/Covid19VaccineResponses
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ATAC-seq folder contains the code for ATAC-seq analysis
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"FASTQ file processing" folder contains scripts and files needed for processing the raw fastq files. Check the README file inside for details.
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GEX-ADT folder contains the code for gene expression and surface protein data
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"Reanalysis of PMID-34252919" folder contains ipynotebooks that re-analyse the data from "Systems vaccinology of the BNT162b2 mRNA vaccine in humans, 2021, PMID: 34252919"