Impute from VCF #1
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Description
The VCF file and reference assembly is used to create a fastq file for each sample in the VCF. These fastq files can then be used to run the normal pipeline
Type of change
What type of changes does your code introduce? Put an
xin boxes that apply.CHANGE(fix or feature that would cause existing functionality to not work as expected)FEATURE(non-breaking change which adds functionality)BUGFIX(non-breaking change which fixes an issue)ENHANCEMENT(non-breaking change which improves existing functionality)NONE(if none of the other choices apply. Example, tooling, build system, CI, docs, etc.)Checklist:
Changelog entry
Impute from VCF file
Added a new command "map-reads-vcf" to impute from VCF file