Release 0.6.0 (#116)

* Add an empty define for TILEDB_DEPRECATED as a short term measure

* Enable TileDB 2.0.0 in CI matrix

* Make Author email-less, and set Maintainer to R specific email

* Updated pkdown generated docs, updated README

* Version 0.6.0

.travis.yml

@@ -17,6 +17,8 @@ jobs:
       env: DOCKER_CNTR="eddelbuettel/rocker-tiledb:1.7.6"
     - name: 1.7.7
       env: DOCKER_CNTR="eddelbuettel/rocker-tiledb:1.7.7"
+    - name: 2.0.0
+      env: DOCKER_CNTR="eddelbuettel/rocker-tiledb:2.0.0"
 
 env:
   global:

DESCRIPTION

@@ -1,9 +1,9 @@
 Package: tiledb
 Type: Package
 Title: Sparse and Dense Multidimensional Array Data Management
-Version: 0.5.0
-Author: TileDB <[email protected]>
-Maintainer: TileDB <help@tiledb.com>
+Version: 0.6.0
+Author: TileDB, Inc.
+Maintainer: TileDB <support@tiledb.com>
 Description: The efficient multi-dimensional array management system
  'TileDB' introduces a novel on-disk format that can effectively store
  dense and sparse array data with support for fast updates and

README.md

@@ -9,42 +9,39 @@ engine](https://github.com/TileDB-Inc/TileDB) of [TileDB](https://tiledb.com/).
 
 Note that the R interface to TileDB is under development, and the API is subject to change.
 
-## [Documentation](https://tiledb-inc.github.io/TileDB-R/)
+## Documentation
 
-## Quickstart
-
-TileDB needs to be installed first (from a package or from source)
-for the TileDB R package to build and link correctly:
-
-    > install.packages("remotes")
-    > library(remotes)
-    > remotes::install_github("TileDB-Inc/TileDB-R")
-    ...
-    > library(tiledb)
-    > tiledb_version()
-    major minor patch
-        1     7     5
-    > help(package=tiledb)
+Documentation is available for [the R
+package](https://tiledb-inc.github.io/TileDB-R/) as well as for the [TileDB
+API](https://docs.tiledb.com/main/).
 
 ## Installation
 
+TileDB needs to be installed first (from a package or from source)
+for the TileDB R package to build and link correctly.
+
 As the TileDB R package has not been published on [CRAN](https://cran.r-project.org/), it must be
 installed from source.
 
 The most recent released version can be installed from
 [Github](https://github.com/TileDB-Inc/TileDB-R) using the package
 [remotes](https://cran.r-project.org/package=remotes).
 
-    install.packages("remotes")
-    library(remotes)
-    remotes::install_github("TileDB-Inc/TileDB-R")
+    > if (!requireNamespace("remotes",quietly=TRUE)) install.packages("remotes")
+    > remotes::install_github("TileDB-Inc/TileDB-R")
+    ...
+    > library(tiledb)
+    > tiledb_version()
+    major minor patch
+        2     0     0
+    > help(package=tiledb)
 
 If the TileDB library is installed in a custom location, you need to pass the explicit path:
 
-    remotes::install_github("TileDB-Inc/TileDB-R",
-        args="--configure-args='--with-tiledb=/path/to/tiledb'")
+    > remotes::install_github("TileDB-Inc/TileDB-R",
+          args="--configure-args='--with-tiledb=/path/to/tiledb'")
 
-Note that the TileDB R package is developed and tested against the latest stable (`v1.7.x`) version
+Note that the TileDB R package is developed and tested against the latest stable (`v2.0.x`) version
 of TileDB, but should also build against the newest development version.
 
 ## Quick Links

_pkgdown.yml

@@ -7,51 +7,80 @@ reference:
   - starts_with("tiledb_ctx")
   - starts_with("tiledb_is_supported_fs")
   - starts_with("tiledb_ctx_set_tag")
+  - ends_with("_context")
+  - ends_with("tiledb_ctx-method")
+  - matches("tiledb_get_context")
+  - matches("tiledb_set_context")
 - title: Config
   contents:
   - starts_with("tiledb_config")
-  - starts_with("`[`.tiledb_config")
   - starts_with("as.vector.tiledb_config")
   - starts_with("as.data.frame.tiledb_config")
+  - ends_with("tiledb_config-method")
+  - matches(",tiledb_config,ANY")
 - title: Array
   contents:
   - starts_with("tiledb_array_create")
   - starts_with("tiledb_dense")
   - starts_with("tiledb_sparse")
+  - matches("tiledb_array")
+  - matches(",tiledb_dense")
+  - matches(",tiledb_sparse")
+  - matches("tiledb_subarray")
 - title: ArraySchema
   contents:
   - starts_with("tiledb_array_schema")
+  - matches("r_to_tiledb_type")
 - title: Attribute
   contents:
   - starts_with("tiledb_attr")
   - starts_with("attr")
+  - ends_with("tiledb_attr-method")
 - title: Filter
   contents:
   - starts_with("tiledb_filter")
   - starts_with("filter")
 - title: FilterList
   contents:
-  - starts_with("tiledb_filterlist")
-  - starts_with("filterlist")
+  - matches("tiledb_filter_list")
+  - starts_with("filter_list")
+  - ends_with("filter_list-method")
 - title: Domain
   contents:
-  - starts_with("tiledb_domain") 
+  - starts_with("tiledb_domain")
   - starts_with("tiledb_ndim")
+  - ends_with("tiledb_domain-method")
 - title: Dim
   contents:
   - starts_with("tiledb_dim")
   - starts_with("dim")
+  - ends_with("tiledb_dim-method")
+  - ends_with("tiledb_dim")
 - title: Group
   contents:
   - starts_with("tiledb_group")
 - title: Object
   desc: object management functions
   contents:
-  - starts_with("tiledb_object") 
+  - starts_with("tiledb_object")
+  - matches("is.anonymous")
+- title: MetaData
+  desc: arrray metadata functionality
+  contents:
+  - ends_with("metadata")
 - title: Stats
   desc:  performance stat collection functions
   contents:
   - starts_with("tiledb_stats")
-- title: Version
+- title: DataFrame
+  desc:  data.frame functionality functions
+  contents:
+  - matches("as_data_frame")
+  - matches("fromDataFrame")
+  - starts_with("return.data.frame")
+  - matches("data.frame")
+- title: Package
+  desc: package and version information
   contents:
   - starts_with("tiledb_version")
+  - matches("tiledb-package")