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1. geneformer_benchmarking geneformer_benchmarking Public

   Geneformer benchmarking for single-cell cell type classification from preprocessing to evaluation metrics and confusion-matrix analysis

   Jupyter Notebook

2. immune-state-modeling-scRNA immune-state-modeling-scRNA Public

   A modular and reproducible pipeline for quantitative modeling of immune cell state architecture from single-cell RNA-seq data, enabling rigorous patient-level heterogeneity analysis.

3. Internship2024-Computational-Neuroscience-INI Internship2024-Computational-Neuroscience-INI Public

   Creating excitatory and inhibitory neural networks using NEST to study spatial navigation in hippocampus

   Jupyter Notebook

4. mspepid-nfcore mspepid-nfcore Public

   Forked from nf-core/mspepid

   nf-core compliant mspepid pipeline for mass-spectrometry based peptide identification

   Nextflow