Repository associated with the manuscript 'Genome-resolved diversity and biosynthetic potential of the reef microbiome' and the Reef Microbiomics Database.
It contains the code to generate the analyses and figures reported in the manuscript based on the data available at Zenodo.
Link to manuscript to come.
├── resources/ --> small tables, icons or color palettes used by the scripts
└── scripts/ --> the scripts used to reproduce analyses, figures and tables
To reproduce those analysis, you need a local installation of git and R.
You can clone the repository with: git clone [email protected]:SushiLab/reef-microbiomics-paper.git
Install the following R packages:
- tidyverse
- googlesheets4
- UpSetR
- patchwork
- sabre
- vegan
- htmlwidgets
- ape
You can then start running the R scripts.