fMRI_CodeScripts

Samples from working with different fMRI preprocessing interfaces and analysis packages

Name		Name	Last commit message	Last commit date
.gitignore		.gitignore
FSL_BatchProcessing.sh		FSL_BatchProcessing.sh
LICENSE		LICENSE
MCA_BIDS_Events_04162024.ipynb		MCA_BIDS_Events_04162024.ipynb
MCA_FirstLevelDataPrep_FSL_a.sh		MCA_FirstLevelDataPrep_FSL_a.sh
MCA_FirstLevelStats-CompCor-DataPrep.ipynb		MCA_FirstLevelStats-CompCor-DataPrep.ipynb
MCA_MEM_Pipeline-DataPrepStats.ipynb		MCA_MEM_Pipeline-DataPrepStats.ipynb
MCA_MEM_firstlevelSTATSONLY_FEAT_checks.sh		MCA_MEM_firstlevelSTATSONLY_FEAT_checks.sh
MCA_MEM_firstlevel_FEAT_checks_a.sh		MCA_MEM_firstlevel_FEAT_checks_a.sh
MCA_MEM_secondlevel_FEAT_checks.sh		MCA_MEM_secondlevel_FEAT_checks.sh
MCA_MRIcroGL_group_figures.py		MCA_MRIcroGL_group_figures.py
MCA_Mem_DataViz-Scrubbing.ipynb		MCA_Mem_DataViz-Scrubbing.ipynb
MCA_Mem_Motion_Outliers.sh		MCA_Mem_Motion_Outliers.sh
MCA_Mem_Performance.sh		MCA_Mem_Performance.sh
MCA_Mem_StatsOnly_design_template_mpCON_oacV.fsf		MCA_Mem_StatsOnly_design_template_mpCON_oacV.fsf
MCA_Mem_firstleveldesign_template_NOmpCON_oacV.fsf		MCA_Mem_firstleveldesign_template_NOmpCON_oacV.fsf
MCA_Mem_firstleveldesign_template_mpCON_oacV.fsf		MCA_Mem_firstleveldesign_template_mpCON_oacV.fsf
MCA_Overview.ipynb		MCA_Overview.ipynb
MCA_PAIN_feat_trial.sh		MCA_PAIN_feat_trial.sh
MCA_PAIN_firstlevelSTATSONLY_FEAT_checks.sh		MCA_PAIN_firstlevelSTATSONLY_FEAT_checks.sh
MCA_PAIN_vols.sh		MCA_PAIN_vols.sh
MCA_Pain_ FirstLevelStats-CompCor-DataPrep.ipynb		MCA_Pain_ FirstLevelStats-CompCor-DataPrep.ipynb
MCA_Pain_DataViz-Scrubbing.ipynb		MCA_Pain_DataViz-Scrubbing.ipynb
MCA_Pain_Motion_Outliers.sh		MCA_Pain_Motion_Outliers.sh
MCA_Pain_StatsOnly_design_template_mpCON_oacV.fsf		MCA_Pain_StatsOnly_design_template_mpCON_oacV.fsf
MCA_Pain_firstleveldesign_template_NOmpCON_oacV.fsf		MCA_Pain_firstleveldesign_template_NOmpCON_oacV.fsf
MCA_Pain_firstleveldesign_template_mpCON_oacV.fsf		MCA_Pain_firstleveldesign_template_mpCON_oacV.fsf
MCA_Subj_Level_MemPrePro+Stats_FSL_oacI.sh		MCA_Subj_Level_MemPrePro+Stats_FSL_oacI.sh
MCA_Subj_Level_MemPrePro+Stats_FSL_oacV.sh		MCA_Subj_Level_MemPrePro+Stats_FSL_oacV.sh
MCA_Subj_Level_PainPrePro+Stats_FSL_oacI.sh		MCA_Subj_Level_PainPrePro+Stats_FSL_oacI.sh
MCA_Subj_Level_PainPrePro+Stats_FSL_oacV.sh		MCA_Subj_Level_PainPrePro+Stats_FSL_oacV.sh
MRIcroGL_group_figures.py		MRIcroGL_group_figures.py
NLA_DCM2BIDS.sh		NLA_DCM2BIDS.sh
Nilearn_SubjectLevelGLM.ipynb		Nilearn_SubjectLevelGLM.ipynb
README.md		README.md
SENS_FNIRT_Registration.sh		SENS_FNIRT_Registration.sh
fMRI_BIDS_Conversion.sh		fMRI_BIDS_Conversion.sh

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