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Crest reproducibility/joint optimization update#43

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KadenHubler merged 7 commits into
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crest_reproduce
Jul 10, 2026
Merged

Crest reproducibility/joint optimization update#43
KadenHubler merged 7 commits into
masterfrom
crest_reproduce

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Added a seed to CREST and, in conjunction with UFF fixes, creates a much more reproducible output. Added export geometry feature to conformer class for joint optimization exports. Also updated joint optimization logic to mirror that of the quick optimization logic with RDKit > obabel > nothing fallback structure.

@KadenHubler KadenHubler requested review from erm42 and shaldar-0999 July 9, 2026 17:29
@KadenHubler KadenHubler linked an issue Jul 9, 2026 that may be closed by this pull request

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Looks pretty good! Just a few minor changes :)

Comment thread yarp/reaction/external/calc_base.py Outdated
Comment thread yarp/reaction/external/calc_base.py Outdated
Comment thread yarp/reaction/external/calc_base.py Outdated
Comment thread yarp/reaction/conf_sampling/joint_opt.py Outdated
Comment thread yarp/reaction/conf_sampling/joint_opt.py Outdated
Comment thread yarp/reaction/conf_sampling/joint_opt.py Outdated
Comment thread yarp/util/config.py Outdated
@KadenHubler KadenHubler requested a review from erm42 July 10, 2026 14:58

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Looks good to me!

@KadenHubler KadenHubler merged commit b9c8192 into master Jul 10, 2026
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@KadenHubler KadenHubler deleted the crest_reproduce branch July 10, 2026 17:12
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CREST stochasticity causing irreproducible GSM results

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