Merge branch 'develop' into pcu-object

.github/workflows/comment_on_pr.yml

@@ -0,0 +1,42 @@
+name: comment_on_pr
+
+# read-write repo token
+# access to secrets
+on:
+  workflow_run:
+    workflows: ["simmetrx_enabled_pr_comment_trigger_self_hosted"]
+    types:
+      - completed
+
+jobs:
+  upload:
+    permissions:
+      actions: read
+      issues: write
+      pull-requests: write
+    runs-on: ubuntu-latest
+    if: |
+      github.event.workflow_run.conclusion == 'success' ||
+      github.event.workflow_run.conclusion == 'failure'
+    steps:
+      - name: 'Download artifact'
+        uses: actions/download-artifact@v4
+        with:
+          name: pr
+          run-id: ${{ github.event.workflow_run.id }}
+          github-token: ${{ github.token }}
+
+      - name: 'Comment on PR'
+        uses: actions/[email protected]
+        with:
+          github-token: ${{ secrets.GITHUB_TOKEN }}
+          script: |
+            var fs = require('fs');
+            var issue_number = Number(fs.readFileSync('./issueNumber'));
+            var message = String(fs.readFileSync('./message'));
+            await github.rest.issues.createComment({
+              owner: context.repo.owner,
+              repo: context.repo.repo,
+              issue_number: issue_number,
+              body: message
+            });

.github/workflows/simmetrix_enabled_pr_comment_trigger_self_hosted.yml

@@ -0,0 +1,74 @@
+name: simmetrx_enabled_pr_comment_trigger_self_hosted
+
+# Controls when the workflow will run
+on:
+  issue_comment:                                     
+    types: [created]
+
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+jobs:
+  build_and_test:
+    permissions:
+      contents: read
+    # The type of runner that the job will run on
+    runs-on: self-hosted
+
+    if: |
+      github.event.issue.pull_request &&
+      contains(github.event.comment.body, '/runtests') &&
+      (github.event.comment.user.login == 'cwsmith')
+    steps:
+      # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
+      - uses: actions/checkout@v4
+        with:
+          ref: refs/pull/${{ github.event.issue.number }}/head
+          submodules: recursive
+          path: 'core_${{ github.event.issue.number }}'
+
+      - name: build
+        id: build        
+        shell: bash
+        run: |
+          set +e #avoid exiting when lua modules return non-zero on 'warning' messages
+          module use /opt/scorec/spack/rhel9/v0201_4/lmod/linux-rhel9-x86_64/Core/
+          module load gcc/12.3.0-iil3lno 
+          module load mpich/4.1.1-xpoyz4t
+          module load simmetrix-simmodsuite/2024.0-240119dev-7abimo4
+          module load zoltan/3.83-hap4ggo
+          module load cmake/3.26.3-2duxfcd
+          set -e
+          
+          cmake -S core_${{ github.event.issue.number }} \
+            -B ${RUNNER_TEMP}/build \
+            -DCMAKE_CXX_COMPILER=mpicxx \
+            -DCMAKE_C_COMPILER=mpicc \
+            -DCMAKE_VERBOSE_MAKEFILE=ON \
+            -DENABLE_ZOLTAN=ON \
+            -DENABLE_SIMMETRIX=ON \
+            -DSIM_MPI=mpich4.1.1 \
+            -DSIM_PARASOLID=ON \
+            -DSIM_ACIS=ON \
+            -DSKIP_SIMMETRIX_VERSION_CHECK=ON \
+            -DMESHES=${{github.workspace}}/core_${{ github.event.issue.number }}/pumi-meshes \
+            -DIS_TESTING=ON \
+            -DSCOREC_CXX_WARNINGS=ON \
+            -DCMAKE_BUILD_TYPE=Release 
+          cmake --build ${RUNNER_TEMP}/build -j 4
+          ctest --test-dir ${RUNNER_TEMP}/build --output-on-failure
+
+      - name: Save Result Link
+        if: ${{ !cancelled() }} #prepare report unless the job was cancelled
+        run: |
+          mkdir -p ./pr
+          echo "${{ github.event.issue.number }}"  > ./pr/issueNumber
+          echo -n "Test Result: ${{ steps.build.outcome }} "  > ./pr/message
+          echo "[(details)](https://github.com/${{github.repository}}/actions/runs/${{ github.run_id }})" >> ./pr/message
+
+      - name: Upload result
+        if: ${{ !cancelled() }} #upload unless the job was cancelled
+        uses: actions/upload-artifact@v4
+        with:
+          name: pr
+          path: pr/

CMakeLists.txt

@@ -97,6 +97,15 @@ add_custom_target(doc
   WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
   COMMENT "Generating API documentation with Doxygen" VERBATIM
 )
+configure_file(
+  ${CMAKE_CURRENT_SOURCE_DIR}/Doxyfile_internal.in
+  ${CMAKE_CURRENT_BINARY_DIR}/Doxyfile_internal @ONLY
+)
+add_custom_target(docInternal
+  ${DOXYGEN_EXECUTABLE} ${CMAKE_CURRENT_BINARY_DIR}/Doxyfile_internal
+  WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
+  COMMENT "Generating Internal API documentation with Doxygen" VERBATIM
+)
 endif()
 
 set(Trilinos_PREFIX "" CACHE STRING "Trilinos installation directory")
@@ -190,16 +199,6 @@ else()
 endif()
 scorec_export_library(core)
 
-#check for mallinfo2
-if(${CMAKE_CXX_COMPILER_ID} STREQUAL "GNU" OR ${CMAKE_CXX_COMPILER_ID} STREQUAL "Clang")
-  include(CheckCXXSymbolExists)
-  check_cxx_symbol_exists(mallinfo2 "malloc.h" PUMI_HAS_MALLINFO2)
-  if(PUMI_HAS_MALLINFO2)
-    target_compile_definitions(core INTERFACE -DPUMI_HAS_MALLINFO2)
-    target_compile_definitions(pcu PRIVATE -DPUMI_HAS_MALLINFO2)
-  endif()
-endif()
-
 if(BUILD_EXES)
   add_subdirectory(test)
   add_subdirectory(capstone_clis)