Initial commit

.gitignore

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+envs/*
+!envs/.gitkeep

env_update.sh

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+conda env update -f sn_pit_dev.yaml -p ./envs/sn-pit-dev --prune

setup_roman_snpit.sh

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+SHELL_NAME=$(echo $SHELL | sed "s/\/bin\///g")
+
+if [[ $(hostname -A) == *"duke"* ]]
+then
+    module load Anaconda3/2024.02
+    module load gsl
+    module load ROOT
+
+    export PIT_ROOT='/hpc/group/cosmology/roman-sn-pit'
+    # RomanDESC sims
+    export ROMAN_DESC_ROOTDIR='/cwork/mat90/RomanDESC_sims_2024/RomanTDS'
+    export IMSUB_OUT='/hcp/group/cosmoloyg/roman-sn-pit/imsub_out'
+    # SNANA+Pippin
+    export SNDATA_ROOT='/hpc/group/cosmology/roman-sn-pit/SNANA/SNDATA_ROOT'
+    export SNANA_DIR='/hpc/group/cosmology/roman-sn-pit/SNANA/SNANA'
+    export SNANA_ROMAN_USERS='/hpc/group/cosmology/roman-sn-pit/SNANA/SURVEYS/ROMAN'
+    export SCRATCH_SIMDIR=' /cwork/bmr14/SNANA/SCRATCH_SIMDIR/SIM'
+    export PIPPIN_OUTPUT='/cwork/bmr14/SNANA/PIPPIN_OUTPUT'
+
+
+    # >>> conda initialize >>>
+    # !! Contents within this block are managed by 'conda init' !!
+    __conda_setup="$('/opt/apps/rhel9/Anaconda3-2024.02/bin/conda' 'shell.$SHELL_NAME' 'hook' 2> /dev/null)"
+    if [ $? -eq 0 ]; then
+        eval "$__conda_setup"
+    else
+        if [ -f "/opt/apps/rhel9/Anaconda3-2024.02/etc/profile.d/conda.sh" ]; then
+            . "/opt/apps/rhel9/Anaconda3-2024.02/etc/profile.d/conda.sh"
+        else
+            export PATH="/opt/apps/rhel9/Anaconda3-2024.02/bin:$PATH"
+        fi
+    fi
+    unset __conda_setup
+    # <<< conda initialize <<<
+elif [[ $(hostname -A) == *"nersc"* ]]
+then
+    module load conda/Mambaforge-23.1.0-1
+
+    export PIT_ROOT=/global/cfs/cdirs/m4385/
+    # DIFFERENCE IMAGING
+    export SN_INFO_DIR="/pscratch/sd/l/laldorot/object_tables" # Location of object/image tables.
+    export SIMS_DIR="/global/cfs/cdirs/lsst/shared/external/roman-desc-sims/Roman_data" # Location of the Roman-DESC sims.
+    export SNANA_PQ_DIR="/global/cfs/cdirs/lsst/www/DESC_TD_PUBLIC/Roman+DESC/PQ+HDF5_ROMAN+LSST_LARGE" # Location of the SNANA parquet files.
+    export DIA_OUT_DIR="/pscratch/sd/l/laldorot/dia_out" # Parent output folder for DIA pipeline.
+    export NVCC="/opt/nvidia/hpc_sdk/Linux_x86_64/23.9/cuda/12.2/bin/nvcc" # `whereis nvcc` path
+    # SNANA+Pippin
+    export ROMAN_SNPIT="/global/cfs/cdirs/m4385"
+    export SNANA_ROMAN_ROOT="$ROMAN_SNPIT/snana_roman_root"
+
+    # >>> conda initialize >>>
+    # !! Contents within this block are managed by 'conda init' !!
+    __conda_setup="$('/global/common/software/nersc/pe/conda/23.6.0/Mambaforge-23.1.0-1/bin/conda' 'shell.$SHELL_NAME' 'hook' 2> /dev/null)"
+    if [ $? -eq 0 ]; then
+        eval "$__conda_setup"
+    else
+        if [ -f "/global/common/software/nersc/pe/conda/23.6.0/Mambaforge-23.1.0-1/etc/profile.d/conda.sh" ]; then
+            . "/global/common/software/nersc/pe/conda/23.6.0/Mambaforge-23.1.0-1/etc/profile.d/conda.sh"
+        else
+            export PATH="/global/common/software/nersc/pe/conda/23.6.0/Mambaforge-23.1.0-1/bin:$PATH"
+        fi
+    fi
+    unset __conda_setup
+    # <<< conda initialize <<<
+else
+    echo "Unsure what machine you are on. Contact Ben Rose." >&2
+fi
+
+
+
+conda activate $PIT_ROOT/conda_env/envs/sn-pit-dev

sn_pit_dev.yaml

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+# Roman Supernova PIT Development Environment
+# 
+# Contact: Benjamin Rose, [email protected]
+# History:
+#   - initial testing, Jul 24, 2024
+# Usage:
+#   - update
+#     - conda env update -f sn_pit_dev.yaml -p ./envs/sn-pit-dev --prune
+#   - install
+#     - conda env create -f sn_pit_dev.yaml -p ./envs/sn-pit-dev
+#
+
+channels:
+  - conda-forge
+dependencies:
+  - python=3.11
+  - fitsio   # was not installing as an implied dependency
+  - scikit-image
+  - pip
+  - pyfftw #needed for sfft, and pip+arm does not work
+  - pip:
+    - dust_extinction
+    - jdaviz #roman-sci-platform
+    - pandeia.engine #roman-sci-platform
+    - rad #roman-sci-platform
+    - roman_datamodels #roman-sci-platform
+    - romancal #roman-sci-platform
+    - romanisim #roman-sci-platform
+    - skyCatalogs
+    - stips #roman-sci-platform
+    - webbpsf #roman-sci-platform
+    - bokeh #roman-sci-platform
+    - s3fs #roman-sci-platform
+    - xarray #roman-sci-platform
+    - stsynphot #roman-sci-platform
+    - "git+https://github.com/laldoroty/phrosty"
+    - "git+https://github.com/matroxel/roman_imsim"
+    - "git+https://github.com/laldoroty/sfft@pyswarp"