Modify node regularization in kinetic families. #2856

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Nora-Khalil wants to merge 7 commits intoReactionMechanismGenerator:mainfrom

Nora-Khalil:fixing_node_regularization

Commits on Nov 13, 2025

first attempt at fixing regularization

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cleaned up and commented

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more clean up

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Commits on Nov 14, 2025

pulling actual atomtypes from reactions in the complimentary node instead of using their atom symbol to make an atomtype

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Commits on Nov 19, 2025

Scrapping previous changes/attempts to fix bug. Starting fix that allows problematic nodes to generate atomExt extensions that aren't node splitting if the optimization dimension of the regularizat…

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handling leaf nodes. Running leaf nodes through get_extension_edge so regularization info is passed (but not actually extending them).

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Commits on Nov 21, 2025

cleaning up print statements

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