RMG-Py Version 3.3.0 stable Update

.conda/meta.yaml

@@ -1,87 +1,185 @@
-# For conda build
+# meta.yaml
+#
+# welcome to meta.yaml, poor soul that you are. this file specifies the 'recipe' for compiling
+# RMG-Py into binaries which can then be uploaded for access via the conda package manager
+# to use this file, you can follow the procedure shown in .github/workflows/conda_build.yml
+#
 package:
   name: rmg
-  version: 3.2.0
+  version: 3.3.0
 
 source:
   path: ../
 
 build:
-  number: {{ environ.get('GIT_DESCRIBE_NUMBER', 0) }}
+  number: 0
+  script: |
+    python utilities.py check-pydas  # write the rmgpy/solver/settings.pxi file
+    python setup.py install --single-version-externally-managed --record=record.txt
 
 requirements:
   build:
-    - {{ compiler('c') }} # [unix]
+    - {{ compiler('c') }}
   host:
-    - cython >=0.25.2
-    - lpsolve55
-    - numpy
-    - openbabel >=3
-    - pydas >=1.0.2
-    - pydqed >=1.0.1
-    - pyrdl
-    - python
-    - quantities
-    - rdkit >=2018
-    - scipy
-    - setuptools
+    - conda-forge::cairo
+    - conda-forge::cairocffi
+    - conda-forge::ffmpeg >=7
+    - conda-forge::xlrd
+    - conda-forge::xlwt
+    - conda-forge::h5py
+    - conda-forge::graphviz >=12
+    - conda-forge::markupsafe
+    - conda-forge::psutil
+    - conda-forge::ncurses
+    - conda-forge::suitesparse
+    - conda-forge::graphviz 
+    - conda-forge::pyopenssl >20
+    - conda-forge::coolprop
+    - conda-forge::cantera =2.6
+    - conda-forge::mopac
+    - conda-forge::cclib >=1.6.3,<1.9
+    - conda-forge::openbabel >=3
+    - conda-forge::rdkit >=2022.09.1
+    - conda-forge::python >=3.9
+    - conda-forge::setuptools <80
+    - conda-forge::coverage
+    - conda-forge::cython >=0.25.2,<3.1
+    - conda-forge::scikit-learn
+    - conda-forge::scipy >=1.9
+    - conda-forge::numpy >=1.10.0,<2
+    - conda-forge::pydot
+    - conda-forge::jinja2
+    - conda-forge::jupyter
+    - conda-forge::pymongo
+    - conda-forge::pyparsing
+    - conda-forge::pyyaml
+    - conda-forge::networkx
+    - conda-forge::pytest
+    - conda-forge::pytest-cov
+    - conda-forge::pytest-check
+    - conda-forge::pyutilib
+    - conda-forge::matplotlib >=1.5
+    - conda-forge::mpmath
+    - conda-forge::pandas
+    - conda-forge::gprof2dot
+    - conda-forge::numdifftools
+    - conda-forge::quantities !=0.16.0,!=0.16.1
+    - conda-forge::ringdecomposerlib-python
+    - rmg::pydas >=1.0.3
+    - rmg::pydqed >=1.0.3
+    - rmg::symmetry
+    - rmg::rmgdatabase =3.3.0
+    - blas=*=openblas
   run:
-    - cairo
-    - cairocffi
-    - cantera >=2.3.0
-    - cclib >=1.6.3
-    - chemprop
-    - coolprop
-    - coverage
-    - cython >=0.25.2
-    - ffmpeg
-    - gprof2dot
-    - graphviz
-    - h5py
-    - jinja2
-    - jupyter
-    - lpsolve55
-    - markupsafe
-    - matplotlib >=1.5
-    - mopac
-    - mpmath
-    - muq2
-    - networkx
-    - nose
-    - numdifftools
-    - {{ pin_compatible('numpy') }}
-    - openbabel >=3
-    - pandas
-    - psutil
-    - pydas >=1.0.2
-    - pydot
-    - pydqed >=1.0.1
-    - pymongo
-    - pyparsing
-    - pyrdl
-    - python
-    - pyyaml
-    - pyzmq
-    - quantities
-    - rdkit >=2018
-    - rmgdatabase >=3.2.0
-    - scikit-learn
-    - scipy
-    - symmetry
-    - xlrd
-    - xlwt
+    - conda-forge::cairo
+    - conda-forge::cairocffi
+    - conda-forge::ffmpeg >=7
+    - conda-forge::xlrd
+    - conda-forge::xlwt
+    - conda-forge::h5py
+    - conda-forge::graphviz >=12
+    - conda-forge::markupsafe
+    - conda-forge::psutil
+    - conda-forge::ncurses
+    - conda-forge::suitesparse
+    - conda-forge::graphviz 
+    - conda-forge::pyopenssl >20
+    - conda-forge::coolprop
+    - conda-forge::cantera =2.6
+    - conda-forge::mopac
+    - conda-forge::cclib >=1.6.3,<1.9
+    - conda-forge::openbabel >=3
+    - conda-forge::rdkit >=2022.09.1
+    - conda-forge::python >=3.9
+    - conda-forge::setuptools <80
+    - conda-forge::coverage
+    - conda-forge::cython >=0.25.2,<3.1
+    - conda-forge::scikit-learn
+    - conda-forge::scipy >=1.9
+    - conda-forge::numpy >=1.10.0,<2
+    - conda-forge::pydot
+    - conda-forge::jinja2
+    - conda-forge::jupyter
+    - conda-forge::pymongo
+    - conda-forge::pyparsing
+    - conda-forge::pyyaml
+    - conda-forge::networkx
+    - conda-forge::pytest
+    - conda-forge::pytest-cov
+    - conda-forge::pytest-check
+    - conda-forge::pyutilib
+    - conda-forge::matplotlib >=1.5
+    - conda-forge::mpmath
+    - conda-forge::pandas
+    - conda-forge::gprof2dot
+    - conda-forge::numdifftools
+    - conda-forge::quantities !=0.16.0,!=0.16.1
+    - conda-forge::ringdecomposerlib-python
+    - rmg::pydas >=1.0.3
+    - rmg::pydqed >=1.0.3
+    - rmg::symmetry
+    - rmg::rmgdatabase =3.3.0
+    - blas=*=openblas
 test:
+  requires:
+    - conda-forge::cairo
+    - conda-forge::cairocffi
+    - conda-forge::ffmpeg >=7
+    - conda-forge::xlrd
+    - conda-forge::xlwt
+    - conda-forge::h5py
+    - conda-forge::graphviz >=12
+    - conda-forge::markupsafe
+    - conda-forge::psutil
+    - conda-forge::ncurses
+    - conda-forge::suitesparse
+    - conda-forge::graphviz 
+    - conda-forge::pyopenssl >20
+    - conda-forge::coolprop
+    - conda-forge::cantera =2.6
+    - conda-forge::mopac
+    - conda-forge::cclib >=1.6.3,<1.9
+    - conda-forge::openbabel >=3
+    - conda-forge::rdkit >=2022.09.1
+    - conda-forge::python >=3.9
+    - conda-forge::setuptools <80
+    - conda-forge::coverage
+    - conda-forge::cython >=0.25.2,<3.1
+    - conda-forge::scikit-learn
+    - conda-forge::scipy >=1.9
+    - conda-forge::numpy >=1.10.0,<2
+    - conda-forge::pydot
+    - conda-forge::jinja2
+    - conda-forge::jupyter
+    - conda-forge::pymongo
+    - conda-forge::pyparsing
+    - conda-forge::pyyaml
+    - conda-forge::networkx
+    - conda-forge::pytest
+    - conda-forge::pytest-cov
+    - conda-forge::pytest-check
+    - conda-forge::pyutilib
+    - conda-forge::matplotlib >=1.5
+    - conda-forge::mpmath
+    - conda-forge::pandas
+    - conda-forge::gprof2dot
+    - conda-forge::numdifftools
+    - conda-forge::quantities !=0.16.0,!=0.16.1
+    - conda-forge::ringdecomposerlib-python
+    - rmg::pydas >=1.0.3
+    - rmg::pydqed >=1.0.3
+    - rmg::symmetry
+    - rmg::rmgdatabase =3.3.0
+    - blas=*=openblas
   source_files:
     - 'examples/rmg/superminimal'
-    - 'examples/arkane/networks/n-butanol'
+    - 'examples/arkane/networks/n-butanol_msc'
   imports:
     - rmgpy
     - arkane
   commands:
-    - rmg.py examples/rmg/superminimal/input.py # [unix]
-    - Arkane.py examples/arkane/networks/n-butanol/input.py # [unix]
-    - python %SCRIPTS%\rmg.py examples\rmg\superminimal\input.py # [win]
-    - python %SCRIPTS\Arkane.py examples\arkane\networks\n-butanol\input.py # [win]
+    - rmg.py examples/rmg/superminimal/input.py
+    - Arkane.py examples/arkane/networks/n-butanol_msc/input.py
 
 about:
   home: https://github.com/ReactionMechanismGenerator/RMG-Py