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refactor: replace os.path with pathlib in workspace scripts #12

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Merged
Jammy2211 merged 1 commit into from
May 7, 2026
Merged

refactor: replace os.path with pathlib in workspace scripts #12

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2 changes: 1 addition & 1 deletion tools/extra_galaxies_centres_gui.py
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Original file line number Diff line number Diff line change
Expand Up @@ -161,7 +161,7 @@

info = {}

if os.path.exists(dataset_main_path / "info.json"):
if Path(dataset_main_path / "info.json").exists():
try:
with open(dataset_main_path / "info.json") as json_file:
info = json.load(json_file)
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8 changes: 4 additions & 4 deletions tools/psf_size.py
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Original file line number Diff line number Diff line change
Expand Up @@ -19,10 +19,10 @@

import os
import json
from os import path
import autolens as al
import autolens.plot as aplt
import numpy as np
from pathlib import Path

"""
__Dataset__
Expand All @@ -32,10 +32,10 @@
"""

dataset_name = "102019586_NEG564463213499964061"
dataset_path = path.join("dataset", dataset_name)
dataset_path = Path("dataset") / dataset_name

psf_full = al.Convolver.from_fits(
file_path=path.join(dataset_path, "psf_full.fits"), hdu=0, pixel_scales=0.1
file_path=Path(dataset_path) / "psf_full.fits", hdu=0, pixel_scales=0.1
)

print("PSF Shape Before Trimming:")
Expand All @@ -48,7 +48,7 @@

psf = psf_full.resized_from(new_shape=new_shape)

psf.output_to_fits(file_path=path.join(dataset_path, "psf.fits"), overwrite=True)
psf.output_to_fits(file_path=Path(dataset_path) / "psf.fits", overwrite=True)


"""
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3 changes: 1 addition & 2 deletions workflow/csv_make.py
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Original file line number Diff line number Diff line change
Expand Up @@ -43,7 +43,6 @@
# print(f"Working Directory has been set to `{workspace_path}`")

from pathlib import Path
from os import path

import autofit as af
import autolens as al
Expand Down Expand Up @@ -89,7 +88,7 @@
"""
from autofit.aggregator.aggregator import Aggregator

agg = Aggregator.from_directory(directory=path.join("output"), completed_only=True)
agg = Aggregator.from_directory(directory=Path("output"), completed_only=True)

"""
Use a query on the aggregator to only get results for the `mass_total[1]` model-fit, which contains the final lens
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3 changes: 1 addition & 2 deletions workflow/example/csv/lens_mass.py
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Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,6 @@
# print(f"Working Directory has been set to `{workspace_path}`")

from pathlib import Path
from os import path

import autofit as af
import autolens as al
Expand Down Expand Up @@ -64,7 +63,7 @@
"""
from autofit.aggregator.aggregator import Aggregator

agg = Aggregator.from_directory(directory=path.join("output"), completed_only=True)
agg = Aggregator.from_directory(directory=Path("output"), completed_only=True)

"""
Use a query on the aggregator to only get results for the `mass_total[1]` model-fit, which contains the final lens
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3 changes: 1 addition & 2 deletions workflow/example/csv/magnitudes.py
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Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,6 @@
# print(f"Working Directory has been set to `{workspace_path}`")

from pathlib import Path
from os import path

import autofit as af
import autolens as al
Expand Down Expand Up @@ -64,7 +63,7 @@
"""
from autofit.aggregator.aggregator import Aggregator

agg = Aggregator.from_directory(directory=path.join("output"), completed_only=True)
agg = Aggregator.from_directory(directory=Path("output"), completed_only=True)

"""
Use a query on the aggregator to only get results for the `mass_total[1]` model-fit, which contains the final lens
Expand Down
3 changes: 1 addition & 2 deletions workflow/example/png/mge_inspect.py
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Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,6 @@
# print(f"Working Directory has been set to `{workspace_path}`")

from pathlib import Path
from os import path

import autofit as af
import autolens as al
Expand Down Expand Up @@ -65,7 +64,7 @@
"""
from autofit.aggregator.aggregator import Aggregator

agg = Aggregator.from_directory(directory=path.join("output"), completed_only=True)
agg = Aggregator.from_directory(directory=Path("output"), completed_only=True)

"""
Use a query on the aggregator to only get results for the `mass_total[1]` model-fit, which contains the final lens
Expand Down
5 changes: 2 additions & 3 deletions workflow/fits_make.py
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Original file line number Diff line number Diff line change
Expand Up @@ -46,7 +46,6 @@
# %cd $workspace_path
# print(f"Working Directory has been set to `{workspace_path}`")

from os import path
from pathlib import Path

import autofit as af
Expand Down Expand Up @@ -93,7 +92,7 @@
"""
from autofit.aggregator.aggregator import Aggregator

agg = Aggregator.from_directory(directory=path.join("output"), completed_only=True)
agg = Aggregator.from_directory(directory=Path("output"), completed_only=True)

"""
Use a query on the aggregator to only get results for the `mass_total[1]` model-fit, which contains the final lens
Expand Down Expand Up @@ -195,7 +194,7 @@

When we add a single .png, we cannot extract or make it, it simply gets added to the subplot.
"""
# image_rgb = Image.open(path.join(dataset_path, "rgb.png"))
# image_rgb = Image.open(Path(dataset_path) / "rgb.png")
#
# image = agg_fits.extract_fits(
# al.agg.subplot_dataset.data,
Expand Down
3 changes: 1 addition & 2 deletions workflow/png_make.py
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Original file line number Diff line number Diff line change
Expand Up @@ -49,7 +49,6 @@
# print(f"Working Directory has been set to `{workspace_path}`")

from pathlib import Path
from os import path

import autofit as af
import autolens as al
Expand Down Expand Up @@ -95,7 +94,7 @@
"""
from autofit.aggregator.aggregator import Aggregator

agg = Aggregator.from_directory(directory=path.join("output"), completed_only=True)
agg = Aggregator.from_directory(directory=Path("output"), completed_only=True)

"""
Use a query on the aggregator to only get results for the `mass_total[1]` model-fit, which contains the final lens
Expand Down
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