Enhance MONAI Label tutorial on using VISTA3D #1860
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This PR adds comprehensive VISTA3D tutorials and documentation to MONAI Label, addressing the need for enhanced guidance on using the VISTA3D universal segmentation model.
What's Added
Comprehensive Tutorial Documentation
docs/source/tutorials/vista3d_tutorial.md): 270+ line comprehensive guide covering setup, usage, troubleshooting, and clinical workflowsdocs/source/tutorials/vista3d_quickstart.md): Fast setup guide for immediate VISTA3D deploymentdocs/source/tutorials/vista3d_configurations.md): Sample configurations for various deployment scenarios including memory optimization, PACS integration, and Docker deploymentMain README Enhancements
MONAIBundle App Integration
sample-apps/monaibundle/README.mdFormal Documentation System
docs/source/tutorials.rstfor Sphinx documentation integrationdocs/source/index.rst)Key Features Covered
Setup and Installation:
Usage Workflows:
Viewer Integration:
Deployment Scenarios:
Clinical Applications:
The tutorials provide both quick-start capabilities for immediate use and comprehensive guidance for advanced deployment scenarios, making VISTA3D's universal segmentation capabilities accessible to users across different experience levels.
Fixes #1859.
Warning
Firewall rules blocked me from connecting to one or more addresses (expand for details)
I tried to connect to the following addresses, but was blocked by firewall rules:
https://api.github.com/repos/Project-MONAI/model-zoo/contents/modelspython -c import requests try: response = requests.get('REDACTED') if response.status_code == 200: models = response.json() vista_models = [model['name'] for model in models if 'vista' in model['name'].lower()] print('VISTA models in Model Zoo:', vista_models) else: print('Could not fetch model zoo contents') except Exception as e: print('Error fetching model zoo:', str(e))(http block)import requests
try:
# Check the public model zoo for VISTA3D models
url = 'REDACTED'
response = requests.get(url, timeout=10)
if response.status_code == 200:
print('VISTA3D found in model zoo')
print(response.text[:200])
else:
print('VISTA3D not found at expected location')
except Exception as e:
print(f'Error: {e}')` (http block)
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