minor changes

[ypriverol]

Summary by CodeRabbit

• Documentation
  • Expanded conclusion with detailed findings on 664 global download hubs across 58 countries and their role in data reuse.
  • Added forward-looking initiatives for infrastructure and metadata annotation improvements.
  • Updated data availability information for research outputs.
  • Added five new citations to proteomics resources and quality control tools.

[coderabbitai]

Caution

Review failed

The pull request is closed.

📝 Walkthrough

Walkthrough

The pull request expands the Conclusion section of a research paper with detailed findings about download hubs (664 hubs across 58 countries, 18.0 million downloads), infrastructure implications, and forward-looking initiatives. Five new bibliography entries were added to support the expanded discussion.

Changes

Cohort / File(s)	Summary
Paper Conclusion & Data Availability paper/main.tex	Reworked Conclusion section with expanded findings on download hubs, hub types, global distribution, and infrastructure implications. Added discussion of ongoing tooling (pridepy, quantms, Scop3P, MatrisomeDB) and future initiatives (SDRF annotations, quality reports). Updated Data Availability statement to note download log data available upon request from PRIDE team.
Bibliography paper/references.bib	Added five new BibTeX entries: PeptideAtlas project, open source protein identification system, Scop3P phosphosites resource, MatrisomeDB 2.0, and pmultiqc QC reporting library.

Estimated code review effort

🎯 2 (Simple) | ⏱️ ~12 minutes

Poem

🐰 A Conclusion blooms with discovery's glow,
Six-sixty-four hubs dancing far and wide,
Fifty-seven citations freshly penned below,
Infrastructure dreams and future plans collide,
The paper grows, and rabbits hop with pride! 🐾✨

✨ Finishing touches

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Post copyable unit tests in a comment
• Commit unit tests in branch refactor-structure

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