Skip to content

Add fromwdl to janisdk #58

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 2 commits into from
Jun 14, 2023
Merged

Add fromwdl to janisdk #58

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
d152f23
Add fromwdl to janisdk
illusional Sep 1, 2021
a519fc1
Merge branch 'master' into add-fromwdl-to-janisdk
illusional Mar 24, 2022
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 3 additions & 1 deletion janisdk/main.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -4,13 +4,14 @@

from janisdk.container import do_container, add_container_args
from janisdk.fromcwl import do_fromcwl, add_fromcwl_args
from janisdk.fromwdl import do_fromwdl, add_fromwdl_args
from janisdk.runtest import runner as test_runner

from janis_assistant.management.configuration import JanisConfiguration


def process_args():
cmds = {"container": do_container, "run-test": do_runtest, "fromcwl": do_fromcwl}
cmds = {"container": do_container, "run-test": do_runtest, "fromcwl": do_fromcwl, "fromwdl": do_fromwdl}

parser = argparse.ArgumentParser(description="Execute a workflow")
subparsers = parser.add_subparsers(help="subcommand help", dest="command")
Expand All @@ -20,6 +21,7 @@ def process_args():
add_container_args(subparsers.add_parser("container"))
test_runner.add_runtest_args(subparsers.add_parser("run-test"))
add_fromcwl_args(subparsers.add_parser("fromcwl"))
add_fromwdl_args(subparsers.add_parser("fromwdl"))

args = parser.parse_args()
return cmds[args.command](args)
Expand Down