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Toy implementation for WDL -> Janis parser #68
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Test Failed for group 602eff8946ca000904222e6b. SamTools:
WGSGermlineGATK:
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This required a loss of structure of the TranslatorBase, so I'll look into a larger refactor later
Codecov Report
@@ Coverage Diff @@
## master #68 +/- ##
==========================================
- Coverage 69.12% 64.28% -4.84%
==========================================
Files 78 80 +2
Lines 10282 11139 +857
==========================================
+ Hits 7107 7161 +54
- Misses 3175 3978 +803
Continue to review full report at Codecov.
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Closed in favour of: #69 |
Uses the MiniWDL parser and maps back to Janis. Only works for simple task definitions, workflow support still to come.
Still a few issues with a WDL string potentially still having placeholders in it, but it's a good starting point.