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Calibration Option for Burden Scores#111

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meyerkm wants to merge 39 commits intomainPMBio/deeprvat:mainfrom score-calibrationPMBio/deeprvat:score-calibrationCopy head branch name to clipboard

+112-146

Commits

Commits on Jul 15, 2024

• add center & scaling feature for burden scores

  meyerkm

  committed
  653cff2

Commits on Jul 17, 2024

• fixup snakemake rule spacing

  meyerkm

  committed
  71c3488

• Add in center_scale_burden option to config generation

  meyerkm

  committed
  950468c

• fixup! Format Python code with psf/black pull_request

  

  PMBio

  authored and

  PMBio

  committed
  9626e01

Commits on Jul 18, 2024

• remove unneeded function argument

  meyerkm

  committed
  542e190

• Merge branch 'score-calibration' of https://github.com/PMBio/deeprvat into score-calibration

  meyerkm

  committed
  d933813

• fixup! Format Python code with psf/black pull_request

  

  PMBio

  authored and

  PMBio

  committed
  8afef13

Commits on Jul 22, 2024

• reduce max computation and set to 1.0

  meyerkm

  committed
  583f54b

• Merge branch 'score-calibration' of https://github.com/PMBio/deeprvat into score-calibration

  meyerkm

  committed
  5baa52e

• fixup! Format Python code with psf/black pull_request

  

  PMBio

  authored and

  PMBio

  committed
  7e85215

Commits on Aug 20, 2024

• move max computation to compute_burdens

  Show description for 18b5ba3
  meyerkm

  committed
  18b5ba3

• fixup! Format Python code with psf/black pull_request

  

  PMBio

  authored and

  PMBio

  committed
  9a0934e

Commits on Aug 21, 2024

• update default to perform score calibration of burdens

  meyerkm

  committed
  4ddbb5a

• Merge remote-tracking branch 'origin/main' into score-calibration

  meyerkm

  committed
  9105273

Commits on Oct 7, 2024

• Merge remote-tracking branch 'origin/main' into score-calibration

  meyerkm

  committed
  036a0de

• remove lsf dir

  meyerkm

  committed
  9c8901f

• fixup! Format Python code with psf/black pull_request

  

  PMBio

  authored and

  PMBio

  committed
  4879d9b

• bugfix compute_burdens rule

  meyerkm

  committed
  c39cf8d

• bugfix

  meyerkm

  committed
  49e06f6

• remove skip_burdens from get_burden

  meyerkm

  committed
  ee88758

• bugfix max computation from main branch merge

  meyerkm

  committed
  9a112dd

• fixup! Format Python code with psf/black pull_request

  

  PMBio

  authored and

  PMBio

  committed
  df40898

• Merge remote-tracking branch 'origin/main' into score-calibration

  meyerkm

  committed
  9cf31f8

Commits on Oct 8, 2024

• github action test

  meyerkm

  committed
  ae8450a

• specify upload-artifact version

  meyerkm

  committed
  ccc5d56

Commits on Oct 9, 2024

• Reset default of center_scale_burdens to True

  meyerkm

  committed
  e28f873

Commits on Oct 14, 2024

• remove unused module

  meyerkm

  committed
  042aa42

• remove extra space

  meyerkm

  committed
  9587f90

• remove extra space

  meyerkm

  committed
  68aabb3

• add release notes

  bfclarke

  committed
  08e01dd

• Merge branch 'score-calibration' of github.com:PMBio/deeprvat into score-calibration

  bfclarke

  committed
  97bd07c

Commits on Oct 17, 2024

• update scaling function

  meyerkm

  committed
  1b626fc

• fixup! Format Python code with psf/black pull_request

  

  PMBio

  authored and

  PMBio

  committed
  a260b8b

• specify center_scale_burdens option in example configs

  meyerkm

  committed
  7c56720

Commits on Oct 22, 2024

• remove hard-coded annotation length

  meyerkm

  committed
  e4d31d6

• fixup! Format Python code with psf/black pull_request

  

  PMBio

  authored and

  PMBio

  committed
  c86757b

• Merge remote-tracking branch 'origin/main' into score-calibration

  meyerkm

  committed
  d69451f

Commits on Nov 4, 2024

• add in center_scale_burdens option from config

  meyerkm

  committed
  b77a98a

• Merge remote-tracking branch 'origin/main' into score-calibration

  meyerkm

  committed
  08b5c93