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add in center_scale_burdens option from config
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meyerkm committed Nov 4, 2024
1 parent d69451f commit b77a98a
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Expand Up @@ -18,6 +18,7 @@ burden_phenotype = phenotypes[0]
n_burden_chunks = config.get("n_burden_chunks", 1) if not debug_flag else 2
n_regression_chunks = config.get("n_regression_chunks", 40) if not debug_flag else 2
n_avg_chunks = config.get('n_avg_chunks', 1)
center_scale_burdens = '--center-scale-burdens ' if config.get('center_scale_burdens', True) else ''
n_trials = config["hyperparameter_optimization"]["n_trials"]
n_bags = config["training"]["n_bags"] if not debug_flag else 3
n_repeats = config["n_repeats"]
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