Issues

• RESNAME selector does not accept 5-character ligand IDs (e.g., A1D51 in 8y42)

  PDBeurope/arpeggio#32 · Filter by author sgvallve opened on Oct 29, 2025
  1

• Arpeggio error: *** Open Babel Warning in PerceiveBondOrders Failed to kekulize aromatic bonds in OBMol::PerceiveBondOrders

  PDBeurope/arpeggio#31 · Filter by author shoumo2021 opened on Jan 20, 2025
  1

• Arpeggio fails when chem_comp.name == "."

  PDBeurope/arpeggio#28 · Filter by author m-crown opened on May 2, 2024
  1

• Arpeggio crashing for low occupancy ligands

  PDBeurope/arpeggio#26 · Filter by author JavierSanchez-Utges opened on Feb 23, 2024

• Arpeggio not working for 5rfa preferred assembly

  PDBeurope/arpeggio#20 · Filter by author JavierSanchez-Utges opened on Dec 21, 2023
  1

• Removing component types for custom CIF files

  PDBeurope/arpeggio#17 · Filter by author ljmartin opened on Mar 29, 2023

• arpeggio not working at all

  PDBeurope/arpeggio#13 · Filter by author shoumo2021 opened on Sep 4, 2022
  1

• arpeggio fails on some PDB structures

  PDBeurope/arpeggio#11 · Filter by author avivrosenberg opened on Aug 8, 2022

• AttributeError with newer openbabel

  PDBeurope/arpeggio#10 · Filter by author multimeric opened on Mar 10, 2022

• AttributeError: 'OBAtom' object has no attribute 'IsHydrogen'

  PDBeurope/arpeggio#7 · Filter by author luwei0917 opened on Nov 4, 2021
  1

• OBBioMatchError

  PDBeurope/arpeggio#4 · Filter by author kuraisle opened on May 11, 2021
  5