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Adding base workflow for ONT pipeline
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{ | ||
"__default__": { | ||
"threads": "2", | ||
"mem": "8g", | ||
"partition": "norm", | ||
"gres": "lscratch:32", | ||
"time": "0-04:00:00" | ||
} | ||
} |
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{ | ||
"options": { | ||
} | ||
} |
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{ | ||
"images": { | ||
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} | ||
} |
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{ | ||
"references": { | ||
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} | ||
} |
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{ | ||
"install": { | ||
"resource_bundle": { | ||
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} | ||
} | ||
} |
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{ | ||
"modules": { | ||
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}, | ||
"conda":{ | ||
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} | ||
} |
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## Steps for Building Docker Images | ||
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Directly below are instructions for building an image using the provided Dockerfile: | ||
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```bash | ||
# See listing of images on computer | ||
docker image ls | ||
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# Build from Dockerfile | ||
docker build --no-cache -f example.dockerfile --tag=example:v0.1.0 . | ||
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# Testing, take a peek inside | ||
docker run -ti example:v0.1.0 /bin/bash | ||
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# Updating Tag before pushing to DockerHub | ||
docker tag example:v0.1.0 skchronicles/example:v0.1.0 | ||
docker tag example:v0.1.0 skchronicles/example # latest | ||
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# Check out new tag(s) | ||
docker image ls | ||
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# Push new tagged image to DockerHub | ||
docker push skchronicles/example:v0.1.0 | ||
docker push skchronicles/example:latest | ||
``` | ||
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### Other Recommended Steps | ||
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Scan your image for known vulnerabilities: | ||
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```bash | ||
docker scan example:v0.1.0 | ||
``` | ||
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> **Please Note**: Any references to `skchronicles` should be replaced your username if you would also like to push the image to a non-org account. |
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