Adding deeptools and removing pycoQC

OpenOmics · Jan 25, 2023 · 43c5ebd · 43c5ebd
1 parent f060af5
commit 43c5ebd
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/docker/modr/Dockerfile b/docker/modr/Dockerfile
@@ -11,7 +11,7 @@ FROM ubuntu:22.04
 #  - nanoplot             # from pypi, installed: 1.41.0
 #  - nanocount            # from pypi, installed: 1.0.0.post6
 #  - nanostat             # from pypi, installed: 1.6.0
-#  - pycoQC               # from pypi, installed: 2.5.2
+#  - deeptools            # from pypi, installed: 3.5.1
 #  - fastqc/0.11.9        # apt-get, installed: 0.11.9
 #  - multiqc/1.14         # from pypi, installed: 1.14
 LABEL maintainer="Skyler Kuhn <[email protected]>" \
@@ -79,7 +79,7 @@ RUN pip3 install --upgrade pip \
     && pip3 install NanoPlot==1.41.0 \
     && pip3 install NanoCount==1.0.0.post6 \
     && pip3 install NanoStat==1.6.0 \
-    && pip3 install pycoQC==2.5.2 \
+    && pip3 install deeptools==3.5.1 \
     && pip3 install multiqc==1.14
 
 ############### INSTALL ################
@@ -107,4 +107,4 @@ WORKDIR /opt2
 ADD Dockerfile /opt2/modr.dockerfile
 RUN chmod -R a+rX /opt2
 ENV PATH="/opt2:$PATH"
-WORKDIR /data2
+WORKDIR /data2