v2.1.0

What's Changed

Summary

• add source recon functionality, including FreeSurfer utils, Mimimum norm methods, etc.
• add glm wrappers for the preproc config
• add OPM utils, e.g., dealing with headshape points
• add toolbox paper scripts to examples

Details

• Release v2.0.0 by @cgohil8 in #359
• fix osl>osl_ephys in docs by @matsvanes in #360
• Fix report/log directory path. by @cgohil8 in #362
• add save_polhemus_fif by @neurofractal in #364
• Fixes and Improvements for RHINO by @cgohil8 in #370
• work in progress for adding freesurfer/surface/minimum norm source recon by @matsvanes in #368
• Update example freesurfer_source_recon.py by @matsvanes in #371
• Add GLM wrappers to preprocessing by @matsvanes in #372
• Improved functions to get leadfields and LCMV weights by @cgohil8 in #374
• added toolbox paper scripts by @matsvanes in #356
• Add utils to downsample and standardise digitised headshape points by @neurofractal in #376
• change size of headshape points based on their number in coreg display by @neurofractal in #375

New Contributors

• @neurofractal made their first contribution in #364

Full Changelog: v2.0.0...v2.1.0

v2.0.0

Renamed project: osl -> osl-ephys

v1.1.0

What's Changed

• Change license to Apache 2.0
• massive update of the documentation
• improvements in glm_epochs and glm_base, particularly regarding stats and plotting
• Ability to run group analysis in run_proc_batch
• Automatic saving of each user defined key in dataset[key] (run_proc_chain/batch)
• Add random seed to preprocessing and source_recon modules.
• improve ica_label (keep ecg/eog on top) and create ica_apply
• Improve report (formatting, navigation)
• improve logs (added extra info, time stamps, random seed, ica label info, etc)
• added features for epoching source reconstructed data

Full Changelog: v0.1.0...v1.1.0

v1.0.0

First release with the new directory structure, see #320.

v0.10.0

Final release before directory restructure.

v0.9.0

What's Changed

• The maxfilter cross talk and calibration files were moved on the hbaws computers, which caused an error. We updated maxfilter file paths to resolve this.
• Updated cbu3_stage maxfiltering.
• ICA labelling updates.
• Updated batch.py, glm_epochs.py, src_report.py.
• Installation and release notes updated.
• Include READMEs in PyPI package. This fixes issues with installing the package using pip.

v0.8.0

What's Changed

• Updated TensorFlow Requirements in OSL-Dynamics by @cgohil8 in #296
• Examples update by @cgohil8 in #297
• Add ica input args by @matsvanes in #305
• FEAT: osl_ica_label command line function for ICA label GUI by @matsvanes in #311
• ENH: improvement in raw and src reports. by @matsvanes in #304 and (#310) #311
• Added the reduced HCP-MMP parcellation from L. Tait's paper. by @cgohil8 in #309
• Updated Mac Installation by @cgohil8 in #313
• Fixed coreg plotting on hbaws by @cgohil8 in #314

Full Changelog: v0.7.0...v0.8.0

v0.7.0

Changes:

• Parcellation demeans before PCA now.
• Can read in bdf/sqd/con files.
• Improved options for preprocessing/source reconstructing CTF data.
• Option to pass MNI fiducials of structurals
• Added functions for cleaning up headshape points and extracting fiducials/headshape points from different files (pos, elc).
• Validated the function to get leadfields.
• Added GLM plotting in source space.
• Updated installation and instructions.

PyPI: https://pypi.org/project/osl/0.7.0/

v0.6.0

Changes:

• Improvements to processing and source reconstruction functions.
• Fixed bugs.

v0.5.1

No functional changes