NorESMhub · rosiealice · Feb 11, 2026 · Feb 11, 2026 · Feb 11, 2026 · Feb 11, 2026
diff --git a/cime_config/usermods_dirs/clm/cmip7_clmfates/README b/cime_config/usermods_dirs/clm/cmip7_clmfates/README
@@ -0,0 +1,2 @@
+
+Making a minimalist output set to check the progress of AD spinup simulations 
diff --git a/cime_config/usermods_dirs/clm/cmip7_clmfates/shell_commands b/cime_config/usermods_dirs/clm/cmip7_clmfates/shell_commands
@@ -0,0 +1,9 @@
+
+compset=`./xmlquery COMPSET --value` 
+echo "fates_history_dimlevel = 1,2" >> user_nl_clm 
+if [[ $compset =~ .*CLM[0-9]+%[^_]*FATES-SP.* ]]; then 
+else 
+    echo "hist_fexcl1='ACTUAL_IMMOB','BTRANMN','EFLXBUILD','EFLX_DYNBAL','EFLX_GRND_LAKE','FATES_DEMOTION_CARBONFLUX','FATES_EXCESS_RESP','FATES_MAINT_RESP_UNREDUCED','FATES_PRIMARY_PATCHFUSION_ERR','FATES_PROMOTION_CARBONFLUX','FATES_SEEDS_IN_LOCAL','FATES_UNGERM_SEED_BANK','HEAT_FROM_AC','HIA','HIA_R','HIA_U','HUMIDEX','HUMIDEX_R','HUMIDEX_U','LAKEICEFRAC_SURF','LAKEICETHICK','LNC','MORTALITY_CROWNAREA_CANOPY','MORTALITY_CROWNAREA_UNDERSTORY','QIRRIG_FROM_GW_CONFINED','QIRRIG_FROM_GW_UNCONFINED','QIRRIG_FROM_SURFACE','RSSHA','RSSUN','SWBGT','SWBGT_U','SWBGT_R','TBUILD','URBAN_AC','URBAN_HEAT','WASTEHEAT','WBT','WBT_R','WBT_U','FPG','FSH_R','F_DENIT','F_N2O_DENIT','F_N2O_NIT','F_NIT','GROSS_NMIN','HEAT_FROM_AC','HIA_R','HIA_U','HUMIDEX_R','HUMIDEX_U','LITTERC_HR','LIT_CEL_N','LIT_LIG_N','LIT_LIG_C','LIT_MET_C','LIT_MET_N','MORTALITY_CROWNAREA_CANOPY','MORTALITY_CROWNAREA_UNDERSTORY','NDEP_TO_SMINN','NET_NMIN','NFIX_TO_SMINN','POTENTIAL_IMMOB','POT_F_DENIT','POT_F_NIT','QIRRIG_FROM_GW_CONFINED','QIRRIG_FROM_GW_UNCONFINED','QIRRIG_FROM_SURFACE','SMINN_TO_PLANT','SMIN_NH4','SMIN_NO3','SMIN_NO3_LEACHED','SMIN_NO3_RUNOFF','SOM_ACT_C','SOM_ACT_N','SOM_PAS_C','SOM_PAS_N','SOM_SLO_C','SUPPLEMENT_TO_SMINN','SWBGT_R','SWBGT_U','TOTCOLC','TOTCOLN','TOTECOSYSC','TOTECOSYSN','TOTLITC_1m','TOTLITN','TOTLITN_1m','TOTSOMN','TOT_WOODPRODN','TOT_WOODPRODN_LOSS','WASTEHEAT','WBT','WBT_U','WBT_R','DWT_WOODPRODN_GAIN','VENTILATION','LIT_LIG_N_vr','LIT_LIG_N_vr','LIT_MET_N_vr','LIT_CEL_N_vr','SOILN_vr','SOM_ACT_N_vr','SOM_PAS_N_vr','SOM_SLO_N_vr','SMINN_vr','SMIN_NO3_vr','DWT_WOODPRODC_GAIN','EFLX_LH_TOT_R','LAISHA','LAISUN','SMINN','TOTSOMN_1m','SMIN_NH4_vr'" >> user_nl_clm
+     echo "hist_fincl1='FATES_VEGC_SZPF'" >> user_nl_clm
+fi 
+
diff --git a/cime_config/usermods_dirs/clm/reduced_output_fates/shell_commands b/cime_config/usermods_dirs/clm/reduced_output_fates/shell_commands
@@ -4,6 +4,7 @@ echo "fates_history_dimlevel = 1,2" >> user_nl_clm
 if [[ $compset =~ .*CLM[0-9]+%[^_]*FATES-SP.* ]]; then 
     echo "hist_fexcl1= 'FATES_CBALANCE_ERROR','FATES_COLD_STATUS','FATES_BURNFRAC','FATES_CROOTMAINTAR','FATES_CROOT_ALLOC','FATES_DAYSINCE_COLDLEAFOFF','FATES_DAYSINCE_COLDLEAFON','FATES_DEMOTION_CARBONFLUX','FATES_DISTURBANCE_RATE_FIRE','FATES_DISTURBANCE_RATE_LOGGING','FATES_DISTURBANCE_RATE_TREEFALL','FATES_EFFECT_WSPEED','FATES_EXCESS_RESP','FATES_FDI','FATES_FIRE_CLOSS','FATES_FIRE_INTENSITY','FATES_FIRE_INTENSITY_BURNFRAC','FATES_FROOT_ALLOC','FATES_FUELCONSUMED','FATES_FUEL_AMOUNT','FATES_FUEL_BULKD','FATES_FUEL_EFF_MOIST','FATES_GDD','FATES_FUEL_SAV','FATES_HARVEST_DEBT','FATES_HARVEST_DEBT_SEC','FATES_HARVEST_WOODPROD_C_FLUX','FATES_HET_RESP','FATES_IGNITIONS','FATES_LEAF_ALLOC','FATES_LITTER_IN','FATES_LITTER_OUT','FATES_LSTEMMAINTAR','FATES_LUCHANGE_WOODPROD_C_FLUX','FATES_MAINT_RESP_UNREDUCED','FATES_MORTALITY_CFLUX_CANOPY','FATES_MORTALITY_CFLUX_USTORY','FATES_NCHILLDAYS','FATES_NCOLDDAYS','FATES_NEP','FATES_NESTEROV_INDEX','FATES_NONSTRUCTC','FATES_NPP','FATES_PRIMARY_PATCHFUSION_ERR','FATES_PRIMARY_PATCHFUSION_ERR','FATES_PROMOTION_CARBONFLUX','FATES_REPROC','FATES_ROS','FATES_SAPWOODC','FATES_STEM_ALLOC','FATES_STOREC','FATES_STOREC_TF','FATES_STORE_ALLOC','FATES_STRUCTC','FATES_TRIMMING','FATES_UNGERM_SEED_BANK','FATES_USTORY_VEGC','FATES_VEGC_ABOVEGROUND','FATES_SEEDLING_POOL','FATES_SEEDS_IN','FATES_SEEDS_IN_LOCAL','FATES_SEED_ALLOC','FATES_SEED_BANK','FSH_R','HEAT_FROM_AC','HIA_R','HIA_U','HUMIDEX_R','HUMIDEX_U','MORTALITY_CROWNAREA_CANOPY','MORTALITY_CROWNAREA_UNDERSTORY','QIRRIG_FROM_GW_CONFINED','QIRRIG_FROM_GW_UNCONFINED','QIRRIG_FROM_SURFACE','SWBGT_R','SWBGT_U',,'WASTEHEAT','WBT','FATES_FUEL_MEF','FATES_GPP_USTORY','HUMIDEX','LNC','TBUILD','URBAN_AC','URBAN_HEAT','VENTILATION','WBT_R','WBT_U'" >> user_nl_clm 
 else 
-    echo "hist_fexcl1='ACTUAL_IMMOB','BTRANMN','EFLXBUILD','EFLX_DYNBAL','EFLX_GRND_LAKE','FATES_DEMOTION_CARBONFLUX','FATES_EXCESS_RESP','FATES_MAINT_RESP_UNREDUCED','FATES_PRIMARY_PATCHFUSION_ERR','FATES_PROMOTION_CARBONFLUX','FATES_SEEDS_IN_LOCAL','FATES_UNGERM_SEED_BANK','HEAT_FROM_AC','HIA','HIA_R','HIA_U','HUMIDEX','HUMIDEX_R','HUMIDEX_U','LAKEICEFRAC_SURF','LAKEICETHICK','LNC','MORTALITY_CROWNAREA_CANOPY','MORTALITY_CROWNAREA_UNDERSTORY','QIRRIG_FROM_GW_CONFINED','QIRRIG_FROM_GW_UNCONFINED','QIRRIG_FROM_SURFACE','RSSHA','RSSUN','SWBGT','SWBGT_U','SWBGT_R','TBUILD','URBAN_AC','URBAN_HEAT','WASTEHEAT','WBT','WBT_R','WBT_U','FPG','FSH_R','F_DENIT','F_N2O_DENIT','F_N2O_NIT','F_NIT','GROSS_NMIN','HEAT_FROM_AC','HIA_R','HIA_U','HUMIDEX_R','HUMIDEX_U','LITTERC_HR','LIT_CEL_N','LIT_LIG_N','LIT_LIG_C','LIT_MET_C','LIT_MET_N','MORTALITY_CROWNAREA_CANOPY','MORTALITY_CROWNAREA_UNDERSTORY','NDEP_TO_SMINN','NET_NMIN','NFIX_TO_SMINN','POTENTIAL_IMMOB','POT_F_DENIT','POT_F_NIT','QIRRIG_FROM_GW_CONFINED','QIRRIG_FROM_GW_UNCONFINED','QIRRIG_FROM_SURFACE','SMINN_TO_PLANT','SMIN_NH4','SMIN_NO3','SMIN_NO3_LEACHED','SMIN_NO3_RUNOFF','SOM_ACT_C','SOM_ACT_N','SOM_C_LEACHED','SOM_PAS_C','SOM_PAS_N','SOM_SLO_C','SUPPLEMENT_TO_SMINN','SWBGT_R','SWBGT_U','TOTCOLC','TOTCOLN','TOTECOSYSC','TOTECOSYSN','TOTLITC','TOTLITC_1m','TOTLITN','TOTLITN_1m','TOTSOMC','TOTSOMN','TOT_WOODPRODC','TOT_WOODPRODC_LOSS','TOT_WOODPRODN','TOT_WOODPRODN_LOSS','WASTEHEAT','WBT','WBT_U','WBT_R','DWT_WOODPRODN_GAIN','VENTILATION','LIT_LIG_N_vr','LIT_LIG_N_vr','LIT_MET_N_vr','LIT_CEL_N_vr','SOILN_vr','SOM_ACT_N_vr','SOM_PAS_N_vr','SOM_SLO_N_vr','SMINN_vr','SMIN_NO3_vr','DWT_WOODPRODC_GAIN','EFLX_LH_TOT_R','LAISHA','LAISUN','SMINN','TOTSOMN_1m','SMIN_NH4_vr'" >> user_nl_clm 
+    echo "hist_fexcl1='ACTUAL_IMMOB','BTRANMN','EFLXBUILD','EFLX_DYNBAL','EFLX_GRND_LAKE','FATES_DEMOTION_CARBONFLUX','FATES_EXCESS_RESP','FATES_MAINT_RESP_UNREDUCED','FATES_PRIMARY_PATCHFUSION_ERR','FATES_PROMOTION_CARBONFLUX','FATES_SEEDS_IN_LOCAL','FATES_UNGERM_SEED_BANK','HEAT_FROM_AC','HIA','HIA_R','HIA_U','HUMIDEX','HUMIDEX_R','HUMIDEX_U','LAKEICEFRAC_SURF','LAKEICETHICK','LNC','MORTALITY_CROWNAREA_CANOPY','MORTALITY_CROWNAREA_UNDERSTORY','QIRRIG_FROM_GW_CONFINED','QIRRIG_FROM_GW_UNCONFINED','QIRRIG_FROM_SURFACE','RSSHA','RSSUN','SWBGT','SWBGT_U','SWBGT_R','TBUILD','URBAN_AC','URBAN_HEAT','WASTEHEAT','WBT','WBT_R','WBT_U','FPG','FSH_R','F_DENIT','F_N2O_DENIT','F_N2O_NIT','F_NIT','GROSS_NMIN','HEAT_FROM_AC','HIA_R','HIA_U','HUMIDEX_R','HUMIDEX_U','LITTERC_HR','LIT_CEL_N','LIT_LIG_N','LIT_LIG_C','LIT_MET_C','LIT_MET_N','MORTALITY_CROWNAREA_CANOPY','MORTALITY_CROWNAREA_UNDERSTORY','NDEP_TO_SMINN','NET_NMIN','NFIX_TO_SMINN','POTENTIAL_IMMOB','POT_F_DENIT','POT_F_NIT','QIRRIG_FROM_GW_CONFINED','QIRRIG_FROM_GW_UNCONFINED','QIRRIG_FROM_SURFACE','SMINN_TO_PLANT','SMIN_NH4','SMIN_NO3','SMIN_NO3_LEACHED','SMIN_NO3_RUNOFF','SOM_ACT_C','SOM_ACT_N','SOM_PAS_C','SOM_PAS_N','SOM_SLO_C','SUPPLEMENT_TO_SMINN','SWBGT_R','SWBGT_U','TOTCOLC','TOTCOLN','TOTECOSYSC','TOTECOSYSN','TOTLITC_1m','TOTLITN','TOTLITN_1m','TOTSOMN','TOT_WOODPRODN','TOT_WOODPRODN_LOSS','WASTEHEAT','WBT','WBT_U','WBT_R','DWT_WOODPRODN_GAIN','VENTILATION','LIT_LIG_N_vr','LIT_LIG_N_vr','LIT_MET_N_vr','LIT_CEL_N_vr','SOILN_vr','SOM_ACT_N_vr','SOM_PAS_N_vr','SOM_SLO_N_vr','SMINN_vr','SMIN_NO3_vr','DWT_WOODPRODC_GAIN','EFLX_LH_TOT_R','LAISHA','LAISUN','SMINN','TOTSOMN_1m','SMIN_NH4_vr','BTRAN2','CROPPROD1N','CROPPROD1N_LOSS','DWT_CROPPROD1N_GAIN','FATES_AUTORESP_CANOPY','FATES_AUTORESP_USTORY','FATES_CANOPY_VEGC','FATES_GPP_CANOPY','FATES_GPP_USTORY','FATES_MORTALITY_CFLUX_CANOPY','FATES_MORTALITY_CFLUX_USTORY','FATES_RXFIRE_BURNABLE_FI','FATES_RXFIRE_BURNABLE_FINAL','FATES_RXFIRE_BURNABLE_FUEL','FATES_RXFIRE_BURNFRAC','FATES_RXFIRE_INTENSITY','FATES_RXFIRE_INTENSITY_BURNFRAC','FATES_RX_BURN_WINDOW','GSSHA','GSSHALN','GSSUN','GSSUNLN','FATES_RXFIRE_BURNFRAC_AP','FATES_RXFIRE_INTENSITY_BURNFRAC_AP','FATES_ZSTAR_AP','FATES_CROWNAREA_CL','FATES_LAI_CANOPY_SZ','FATES_LAI_USTORY_SZ','FATES_MORTALITY_RXFIRE_SZ','FATES_MORTALITY_SENESCENCE_SZ','FATES_MORTALITY_USTORY_SZ','FATES_NPLANT_CANOPY_SZ','FATES_NPLANT_USTORY_SZ','FATES_LEAFAREA_HT','FATES_FUEL_MOISTURE_FC',','FATES_WILDFIRE_INTENSITY_BURNFRAC_AP',''FATES_INTERR_LITTER_EL','FATES_INTERR_LIVEVEG_EL' >> user_nl_clm
+     echo "hist_fincl1='    '" >> user_nl_clm
 fi 
 
diff --git a/cime_config/usermods_dirs/clm/spinup_output_clmfates/README b/cime_config/usermods_dirs/clm/spinup_output_clmfates/README
@@ -0,0 +1,2 @@
+
+Making a minimalist output set to check the progress of AD spinup simulations 
diff --git a/cime_config/usermods_dirs/clm/spinup_output_clmfates/shell_commands b/cime_config/usermods_dirs/clm/spinup_output_clmfates/shell_commands
@@ -0,0 +1,12 @@
+
+compset=`./xmlquery COMPSET --value` 
+echo "fates_history_dimlevel = 1,2" >> user_nl_clm 
+if [[ $compset =~ .*CLM[0-9]+%[^_]*FATES-SP.* ]]; then 
+else 
+    echo "hist_empty_htapes = .true. " >> user_nl_clm
+    echo "fates_history_dimlevel = 1,1" >> user_nl_clm 
+    echo " hist_fincl1 = 'FATES_NOCOMP_PATCHAREA_PF', "TOTEXICE_VOL", "TOTSOILICE", "TOTSOILLIQ",'ALT','ALTMAX','TSL','FATES_FRACTION','TSA','RAIN','SNOW','EFLX_LH_TOT','FSH','QSOIL','TLAI','FCO2','TOTSOMC','TOTSOMC_1m','FATES_VEGC','FATES_GPP','FATES_NEP',"TOT_WOODPRODC_LOSS", "FATES_SEEDS_IN_EXTERN_EL", "TOTLITC", "SOM_C_LEACHED", "FATES_SEED_BANK",'FATES_NPP','TWS','H2OSNO','FSNO','TOT_WOODPRODC','PROD100C','PROD10C','FATES_LITTER_AG_CWD_EL','FATES_LITTER_AG_FINE_EL','FATES_LITTER_BG_CWD_EL','FATES_LITTER_BG_FINE_EL','FATES_GRAZING','FATES_FIRE_CLOSS','FATES_BURNFRAC', 'SOM_C_LEACHED', 'FATES_SEED_BANK'" >> user_nl_clm
+   echo "hist_mfilt=1 " >> user_nl_clm
+   echo "hist_nhtfrq=0  " >> user_nl_clm 
+fi 
+
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@

		Making a minimalist output set to check the progress of AD spinup simulations