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35 Open 212 Closed
35 Open 212 Closed
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Issues list

Propagate RT info to output file enhancement New feature or request
#427 opened Jan 16, 2025 by wsnoble
Possible to reverse Casanovo (i.e., Give it a peptide and obtain a spectrum)?
#426 opened Jan 16, 2025 by ciancone94
Is it possible to train Casanovo using EThcD spectra? question Further information is requested
#424 opened Dec 23, 2024 by DIGEdige
2
Log certain run information at the start of a run instead of the end. enhancement New feature or request good first issue Good for newcomers
#422 opened Dec 19, 2024 by Lilferrit
Predicting isoleucine enhancement New feature or request
#416 opened Dec 10, 2024 by PigeonMark Depthcharge v0.4
Update FAQ about training data. documentation Improvements or additions to documentation
#411 opened Dec 5, 2024 by wsnoble
Extremely long run time on unit tests in GitHub actions Ubuntu environment. bug Something isn't working
#409 opened Dec 3, 2024 by Lilferrit
1
3
Casanovo-DB potential performance improvements enhancement New feature or request
#402 opened Nov 18, 2024 by bittremieux Casanovo v5.0.0
Casanovo-DB tests to add enhancement New feature or request good first issue Good for newcomers
#401 opened Nov 18, 2024 by bittremieux Casanovo v5.0.0
@VarunAnanth2003
Casanovo-DB documentation documentation Improvements or additions to documentation
#400 opened Nov 18, 2024 by bittremieux Casanovo v5.0.0
1
@VarunAnanth2003
Remove pylance depthcharge incompatibility work around. enhancement New feature or request
#388 opened Oct 8, 2024 by Lilferrit Depthcharge v0.4
Remove depthcharge MGF prefix bug workaround enhancement New feature or request
#387 opened Oct 4, 2024 by Lilferrit Depthcharge v0.4
1
Use full file path in the MztabWriter run map instead of just the file name. bug Something isn't working enhancement New feature or request
#386 opened Oct 4, 2024 by Lilferrit Depthcharge v0.4
1
Use lightning.pytorch.loggers.TensorBoardLogger for tensorboard logging. enhancement New feature or request
#382 opened Sep 18, 2024 by Lilferrit
1
@Lilferrit
Implement early stopping / validation patience interval. enhancement New feature or request
#375 opened Sep 6, 2024 by Lilferrit Casanovo v5.0.0
1
ValueError upon unexpected scan title format bug Something isn't working
#354 opened Jul 7, 2024 by MNTsnowman Depthcharge v0.4
1
7
Make Casanovo model compatible with torch.compile enhancement New feature or request
#347 opened Jun 25, 2024 by Lilferrit
Use Fourier embeddings enhancement New feature or request
#345 opened Jun 25, 2024 by wsnoble
Migrating PeptideMass, PeptideDecoder, and PeptideEncoder from depthcharge v0.2.3 to casanovo question Further information is requested
#337 opened May 18, 2024 by CCranney Depthcharge v0.4
1
3
Make Casanovo produce Skyline compatible output enhancement New feature or request
#330 opened May 14, 2024 by wsnoble
@justin-a-sanders
Export casanovo to torchscript/onnx enhancement New feature or request
#328 opened May 11, 2024 by LLautenbacher
1
Add rotary embeddings enhancement New feature or request
#321 opened Apr 17, 2024 by wsnoble
Implement bidirectional decoding enhancement New feature or request
#320 opened Mar 27, 2024 by wsnoble
1
add additional inputs to encoder and decoder enhancement New feature or request
#318 opened Mar 27, 2024 by wsnoble
1
where are the models trained with my own data saved? question Further information is requested
#291 opened Feb 11, 2024 by DIGEdige Casanovo v5.0.0
@Lilferrit
2
ProTip! Follow long discussions with comments:>50.