Move mip-infra from NeuroTech-Platform to Medical-Informatics-Platform

.githooks/pre-commit

@@ -54,7 +54,7 @@ check_file_content() {
       CONTEXT=$(echo "$FILE_CONTENT" | sed -n "${START_LINE},${END_LINE}p")
 
       # Only flag if associated with our repo
-      if echo "$CONTEXT" | grep -q "repoURL:.*NeuroTech-Platform/mip-infra"; then
+      if echo "$CONTEXT" | grep -q "repoURL:.*Medical-Informatics-Platform/mip-infra"; then
         if [[ -n "$TARGET_REVISION_ISSUES" ]]; then
           TARGET_REVISION_ISSUES+=$'\n'
         fi
@@ -147,7 +147,7 @@ if [[ "$ERROR_FOUND" -ne 0 ]]; then
   echo "Deployment command for branch '$CURRENT_BRANCH' (after ensuring files are correct):"
   SAFE_BRANCH_NAME=$(echo "$CURRENT_BRANCH" | sed 's/[^a-zA-Z0-9]/-/g')
   echo "   argocd app create ${SAFE_BRANCH_NAME}-infra-clusterset \\"
-  echo "     --repo https://github.com/NeuroTech-Platform/mip-infra.git \\"
+  echo "     --repo https://github.com/Medical-Informatics-Platform/mip-infra.git \\"
   echo "     --path base/mip-infrastructure \\"
   echo "     --revision $CURRENT_BRANCH \\"
   echo "     --dest-server https://kubernetes.default.svc \\"

.github/workflows/check-main-revisions.yml

@@ -48,7 +48,7 @@ jobs:
                 done
 
                 # Only add to problems if the closest repoURL is our repo
-                if echo "$REPO_LINE" | grep -q "NeuroTech-Platform/mip-infra"; then
+                if echo "$REPO_LINE" | grep -q "Medical-Informatics-Platform/mip-infra"; then
                   TARGET_REVISION_PROBLEMS+="$LINE"$'\n'
                 fi
               done <<< "$TARGET_REVISIONS"

README.md

@@ -303,7 +303,7 @@ chmod +x scripts/gen_secrets.sh
 
 ```bash
 # Clone the repository 
-git clone https://github.com/NeuroTech-Platform/mip-infra.git
+git clone https://github.com/Medical-Informatics-Platform/mip-infra.git
 cd mip-infra
 
 # Checkout the desired branch (main for production, or your feature branch)
@@ -337,7 +337,7 @@ CURRENT_BRANCH=$(git rev-parse --abbrev-ref HEAD)
 SAFE_BRANCH_NAME=$(echo "$CURRENT_BRANCH" | sed 's/[^a-zA-Z0-9]/-/g')
 
 argocd app create ${SAFE_BRANCH_NAME}-argo-projects \
-  --repo https://github.com/NeuroTech-Platform/mip-infra.git \
+  --repo https://github.com/Medical-Informatics-Platform/mip-infra.git \
   --path base \
   --revision $CURRENT_BRANCH \
   --dest-server https://kubernetes.default.svc \
@@ -360,7 +360,7 @@ kubectl get appprojects -n argocd-mip-team
 
 # Create the infrastructure application using Argo CD CLI
 argocd app create ${SAFE_BRANCH_NAME}-infra-clusterset \
-  --repo https://github.com/NeuroTech-Platform/mip-infra.git \
+  --repo https://github.com/Medical-Informatics-Platform/mip-infra.git \
   --path base/mip-infrastructure \
   --revision $CURRENT_BRANCH \
   --project mip-argo-project-infrastructure \
@@ -447,7 +447,7 @@ SAFE_BRANCH_NAME=$(echo "$CURRENT_BRANCH" | sed 's/[^a-zA-Z0-9]/-/g')
 
 # Create and sync the Argo CD application for your branch
 argocd app create ${SAFE_BRANCH_NAME}-infra-clusterset \
-  --repo https://github.com/NeuroTech-Platform/mip-infra.git \
+  --repo https://github.com/Medical-Informatics-Platform/mip-infra.git \
   --path base/mip-infrastructure \
   --revision $CURRENT_BRANCH \
   --project mip-argo-project-infrastructure \

base/argo-projects.yaml

@@ -35,7 +35,7 @@ spec:
     spec:
       project: mip-argo-project-infrastructure
       source:
-        repoURL: https://github.com/NeuroTech-Platform/mip-infra.git
+        repoURL: https://github.com/Medical-Informatics-Platform/mip-infra.git
         targetRevision: main
         path: projects/static/{{ .fileName }}
       destination:
@@ -78,7 +78,7 @@ spec:
     spec:
       project: mip-argo-project-infrastructure
       source:
-        repoURL: https://github.com/NeuroTech-Platform/mip-infra.git
+        repoURL: https://github.com/Medical-Informatics-Platform/mip-infra.git
         targetRevision: main
         path: projects/templates/federation
         helm:

base/mip-infrastructure/mip-infrastructure.yaml

@@ -29,7 +29,7 @@ spec:
     - matrix:
         generators:
           - git:
-              repoURL: https://github.com/NeuroTech-Platform/mip-infra.git
+              repoURL: https://github.com/Medical-Informatics-Platform/mip-infra.git
               revision: main
               directories:
                 # Cluster-wide applications (not for use for the federations, use deployments/shared-apps instead and not declared here)
@@ -42,7 +42,7 @@ spec:
                 - cluster: https://kubernetes.default.svc
                   namespace: argocd-mip-team
                   clusterName: default
-                  repoURL: https://github.com/NeuroTech-Platform/mip-infra.git
+                  repoURL: https://github.com/Medical-Informatics-Platform/mip-infra.git
   goTemplate: true  # for | lower
   template:
     metadata:

common/datacatalog/datacatalog.yaml

@@ -13,7 +13,7 @@ spec:
       path: kubernetes
       helm:
         valueFiles: [values.yaml, $values/common/datacatalog/values.yaml]
-    - repoURL: https://github.com/NeuroTech-Platform/mip-infra.git
+    - repoURL: https://github.com/Medical-Informatics-Platform/mip-infra.git
       targetRevision: main
       ref: values
   destination:

common/nginx-ingress/nginx-ingress.yaml

@@ -8,7 +8,7 @@ metadata:
 spec:
   project: mip-argo-project-common
   source:
-    repoURL: https://github.com/NeuroTech-Platform/mip-infra.git
+    repoURL: https://github.com/Medical-Informatics-Platform/mip-infra.git
     targetRevision: main
     path: common/nginx-ingress/manifests
   destination:

common/security/Chart.yaml

@@ -6,6 +6,6 @@ type: application
 version: 1.0.0
 appVersion: 1.0.0
 keywords: [security, networkpolicy, isolation]
-sources: [https://github.com/NeuroTech-Platform/mip-infra]
+sources: [https://github.com/Medical-Informatics-Platform/mip-infra]
 maintainers:
   - name: MIP Team

common/security/common-templates/Chart.yaml

@@ -6,6 +6,6 @@ type: application
 version: 1.0.0
 appVersion: 1.0.0
 keywords: [security, networkpolicy, common, isolation]
-sources: [https://github.com/NeuroTech-Platform/mip-infra]
+sources: [https://github.com/Medical-Informatics-Platform/mip-infra]
 maintainers:
   - name: MIP Team

common/security/federation/Chart.yaml

@@ -6,6 +6,6 @@ type: application
 version: 1.0.0
 appVersion: 1.0.0
 keywords: [security, networkpolicy, federation, isolation]
-sources: [https://github.com/NeuroTech-Platform/mip-infra]
+sources: [https://github.com/Medical-Informatics-Platform/mip-infra]
 maintainers:
   - name: MIP Team

common/security/netpol.yaml

@@ -40,7 +40,7 @@ spec:
     spec:
       project: mip-argo-project-security
       source:
-        repoURL: https://github.com/NeuroTech-Platform/mip-infra.git
+        repoURL: https://github.com/Medical-Informatics-Platform/mip-infra.git
         targetRevision: main
         path: common/security/federation
         helm:
@@ -93,7 +93,7 @@ spec:
     spec:
       project: mip-argo-project-security
       source:
-        repoURL: https://github.com/NeuroTech-Platform/mip-infra.git
+        repoURL: https://github.com/Medical-Informatics-Platform/mip-infra.git
         targetRevision: main
         path: common/security/common-templates
         helm:

common/submariner/submariner.yaml

@@ -11,7 +11,7 @@ metadata:
 spec:
   project: mip-argo-project-submariner
   sources:
-    - repoURL: https://github.com/NeuroTech-Platform/mip-infra.git
+    - repoURL: https://github.com/Medical-Informatics-Platform/mip-infra.git
       targetRevision: main
       path: common/submariner/broker
   destination:
@@ -35,7 +35,7 @@ metadata:
 spec:
   project: mip-argo-project-submariner
   sources:
-    - repoURL: https://github.com/NeuroTech-Platform/mip-infra.git
+    - repoURL: https://github.com/Medical-Informatics-Platform/mip-infra.git
       targetRevision: main
       path: common/submariner/operator
   destination:

deployments/README.md

@@ -14,10 +14,12 @@ However, you must run the following commands from the root directory of this rep
 cd mip-infra
 
 # Switch any private git URLs to the public repo
-sed -i 's|[email protected]:Medical-Informatics-Platform/mip-deployments.git|https://github.com/NeuroTech-Platform/mip-infra.git|g' base/mip-infrastructure/mip-infrastructure.yaml
-sed -i 's|[email protected]:Medical-Informatics-Platform/mip-deployments.git|https://github.com/NeuroTech-Platform/mip-infra.git|g' base/argo-projects.yaml
-sed -i 's|[email protected]:Medical-Informatics-Platform/mip-deployments.git|https://github.com/NeuroTech-Platform/mip-infra.git|g' deployments/shared-apps/mip-stack/mip-stack.yaml
-sed -i 's|[email protected]:Medical-Informatics-Platform/mip-deployments.git|https://github.com/NeuroTech-Platform/mip-infra.git|g' deployments/shared-apps/exareme2/exareme2.yaml
+
+sed -i 's|[email protected]:Medical-Informatics-Platform/mip-deployments.git|https://github.com/Medical-Informatics-Platform/mip-infra.git|g' base/mip-infrastructure/mip-infrastructure.yaml
+sed -i 's|[email protected]:Medical-Informatics-Platform/mip-deployments.git|https://github.com/Medical-Informatics-Platform/mip-infra.git|g' base/argo-projects.yaml
+sed -i 's|[email protected]:Medical-Informatics-Platform/mip-deployments.git|https://github.com/Medical-Informatics-Platform/mip-infra.git|g' deployments/shared-apps/mip-stack/mip-stack.yaml
+sed -i 's|[email protected]:Medical-Informatics-Platform/mip-deployments.git|https://github.com/Medical-Informatics-Platform/mip-infra.git|g' deployments/shared-apps/exareme2/exareme2.yaml
+
 sed -i '/[email protected]:NeuroTech-Platform\/mip-deployments.git/d' projects/static/mip-federations/mip-federations.yaml
 sed -i '/[email protected]:NeuroTech-Platform\/mip-deployments.git/d' projects/templates/federation/values.yaml
 

deployments/hybrid/federations/federation-Z/mip-infrastructure/customizations/exareme2-kustomize.yaml

@@ -18,7 +18,7 @@ spec:
           - values.yaml
           - $values/deployments/shared-apps/exareme2/values.yaml
           - $values/deployments/hybrid/federations/federation-Z/mip-infrastructure/customizations/exareme2-values.yaml
-    - repoURL: https://github.com/NeuroTech-Platform/mip-infra.git
+    - repoURL: https://github.com/Medical-Informatics-Platform/mip-infra.git
       targetRevision: main
       ref: values
   syncPolicy:

deployments/hybrid/federations/federation-Z/mip-infrastructure/customizations/mip-stack-kustomize.yaml

@@ -30,7 +30,7 @@ spec:
           - values.yaml
           - $values/deployments/shared-apps/mip-stack/values.yaml
           - $values/deployments/hybrid/federations/federation-Z/mip-infrastructure/customizations/mip-stack-values.yaml
-    - repoURL: https://github.com/NeuroTech-Platform/mip-infra.git
+    - repoURL: https://github.com/Medical-Informatics-Platform/mip-infra.git
       targetRevision: main
       ref: values
   syncPolicy:

deployments/hybrid/federations/federation-Z/mip-infrastructure/federation-z.yaml

@@ -11,7 +11,7 @@ metadata:
 spec:
   project: mip-argo-project-federations
   source:
-    repoURL: https://github.com/NeuroTech-Platform/mip-infra.git
+    repoURL: https://github.com/Medical-Informatics-Platform/mip-infra.git
     targetRevision: main
     path: deployments/hybrid/federations/federation-Z
   destination:

deployments/hybrid/federations/federation-Z/mip-infrastructure/network-policies.yaml

@@ -8,7 +8,7 @@ metadata:
 spec:
   project: mip-argo-project-federation-z
   source:
-    repoURL: https://github.com/NeuroTech-Platform/mip-infra.git
+    repoURL: https://github.com/Medical-Informatics-Platform/mip-infra.git
     targetRevision: main
     path: deployments/hybrid/federations/federation-Z/mip-infrastructure/submariner-policies/
   destination:

deployments/local/federations/federation-A/customizations/exareme2-overlay-app.yaml

@@ -18,7 +18,7 @@ spec:
     server: https://kubernetes.default.svc
     namespace: federation-a
   source:
-    repoURL: https://github.com/NeuroTech-Platform/mip-infra.git
+    repoURL: https://github.com/Medical-Informatics-Platform/mip-infra.git
     targetRevision: main
     path: deployments/local/federations/federation-A/customizations/overlays/exareme2
   syncPolicy:

deployments/local/federations/federation-A/federation-a.yaml

@@ -7,7 +7,7 @@ metadata:
 spec:
   project: mip-argo-project-federations
   source:
-    repoURL: https://github.com/NeuroTech-Platform/mip-infra.git
+    repoURL: https://github.com/Medical-Informatics-Platform/mip-infra.git
     targetRevision: main
     path: deployments/local/federations/federation-A
   destination:

deployments/shared-apps/exareme2/exareme2.yaml

@@ -17,7 +17,7 @@ spec:
         valueFiles:
           - values.yaml
           - $values/deployments/shared-apps/exareme2/values.yaml
-    - repoURL: https://github.com/NeuroTech-Platform/mip-infra.git
+    - repoURL: https://github.com/Medical-Informatics-Platform/mip-infra.git
       targetRevision: main
       ref: values
   destination:

deployments/shared-apps/mip-stack/mip-stack.yaml

@@ -18,7 +18,7 @@ spec:
         valueFiles:
           - values.yaml
           - $values/deployments/shared-apps/mip-stack/values.yaml
-    - repoURL: https://github.com/NeuroTech-Platform/mip-infra.git
+    - repoURL: https://github.com/Medical-Informatics-Platform/mip-infra.git
       targetRevision: main
       ref: values
   destination:

projects/mip-infrastructure.yaml

@@ -7,8 +7,8 @@ metadata:
 spec:
   description: Core infrastructure components and ApplicationSets
   sourceRepos:
-    - https://github.com/NeuroTech-Platform/mip-infra.git
-    - [email protected]:Medical-Informatics-Platform/mip-deployments.git
+    - https://github.com/Medical-Informatics-Platform/mip-infra.git
+    - [email protected]:NeuroTech-Platform/mip-deployments.git
   destinations:
     - namespace: argocd-mip-team
       server: https://kubernetes.default.svc

projects/static/mip-common/mip-common.yaml

@@ -7,7 +7,7 @@ metadata:
 spec:
   description: Common resources like monitoring, security, and datacatalog
   sourceRepos:
-    - https://github.com/NeuroTech-Platform/mip-infra.git
+    - https://github.com/Medical-Informatics-Platform/mip-infra.git
     - https://github.com/madgik/datacatalog
     - https://prometheus-community.github.io/helm-charts
     - https://grafana.github.io/helm-charts

projects/static/mip-federations/mip-federations.yaml

@@ -7,7 +7,7 @@ metadata:
 spec:
   description: Federation-specific applications and configurations
   sourceRepos:
-    - https://github.com/NeuroTech-Platform/mip-infra.git
+    - https://github.com/Medical-Informatics-Platform/mip-infra.git
     - [email protected]:Medical-Informatics-Platform/mip-deployments.git
     - https://github.com/madgik/exareme2
     - https://github.com/HBPMedical/mip-deployment

projects/static/mip-security/mip-security.yaml

@@ -7,7 +7,7 @@ metadata:
 spec:
   description: Network security policies and isolation controls for MIP infrastructure
   sourceRepos:
-    - https://github.com/NeuroTech-Platform/mip-infra.git
+    - https://github.com/Medical-Informatics-Platform/mip-infra.git
     - [email protected]:Medical-Informatics-Platform/mip-deployments.git
   destinations:
     # Allow deployment to federation namespaces for network policies

projects/static/mip-shared-apps/mip-shared-apps.yaml

@@ -7,7 +7,7 @@ metadata:
 spec:
   description: Shared applications like exareme2 and mip-stack
   sourceRepos:
-    - https://github.com/NeuroTech-Platform/mip-infra.git
+    - https://github.com/Medical-Informatics-Platform/mip-infra.git
     - https://github.com/madgik/exareme2
     - https://github.com/HBPMedical/mip-deployment
   destinations:

projects/static/submariner/submariner-project.yaml

@@ -8,7 +8,7 @@ metadata:
 spec:
   description: Project for Submariner deployment
   sourceRepos:
-    - https://github.com/NeuroTech-Platform/mip-infra.git
+    - https://github.com/Medical-Informatics-Platform/mip-infra.git
     - https://submariner-io.github.io/submariner-charts/charts
   destinations:
     - namespace: submariner-k8s-broker

projects/static/submariner/submariner-rbac-project.yaml

@@ -6,7 +6,8 @@ metadata:
   namespace: argocd-mip-team
 spec:
   description: Privileged project for Submariner RBAC resources
-  sourceRepos: [https://github.com/NeuroTech-Platform/mip-infra.git]
+  sourceRepos:
+    - https://github.com/Medical-Informatics-Platform/mip-infra.git
   destinations:
     - namespace: submariner-k8s-broker
       server: https://kubernetes.default.svc

projects/templates/federation/values.yaml

@@ -2,7 +2,7 @@
 federationName: federation-a  # This will be overridden by ApplicationSet
 # Default repositories that all federations can use
 sourceRepos:
-  - https://github.com/NeuroTech-Platform/mip-infra.git
+  - https://github.com/Medical-Informatics-Platform/mip-infra.git
   - [email protected]:Medical-Informatics-Platform/mip-deployments.git
   - https://github.com/madgik/exareme2
   - https://github.com/HBPMedical/mip-deployment