update documentation

CITATION.cff

@@ -1,6 +1,7 @@
 cff-version: 1.2.0
 message: "If you use this software, please cite it as below."
 title: "Seq-N-Slide"
+abstract: "Automated workflows for common genomic sequencing-based protocols. Documentation is available at https://igordot.github.io/sns"
 type: software
 authors:
   - orcid: "https://orcid.org/0000-0003-4451-126X"

README.md

@@ -4,42 +4,4 @@
 
 Automated workflows for common sequencing-based (Illumina) protocols, such as RNA-seq, ChIP-seq, ATAC-seq, WGBS/RRBS methylation, whole genome/exome/targeted variant detection, and contaminant screening.
 
-## Brief usage overview
-
-Download the code.
-
-```
-git clone --depth 1 https://github.com/igordot/sns
-```
-
-Generate a sample sheet based on a directory of FASTQ files.
-
-```
-sns/gather-fastqs <fastq_dir>
-```
-
-Specify the reference genome.
-
-```
-sns/generate-settings <genome>
-```
-
-Run the analysis using a specific route.
-
-```
-sns/run <route>
-```
-
-Check if the jobs are submitted and running.
-
-```
-squeue -u $USER
-```
-
-Check for problems.
-
-```
-grep "ERROR:" logs-sbatch/*
-```
-
-For more details, check the full documentation at: https://igordot.github.io/sns
+For more information, see the full documentation at https://igordot.github.io/sns