corrected fastq index command

NYU-BFX · Nov 2, 2016 · 9abb2bd · 9abb2bd
1 parent 2a205e6
commit 9abb2bd
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/referenceFiles/files_needed.bash b/referenceFiles/files_needed.bash
@@ -6,7 +6,7 @@ wget http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/hg19.2bit
 
 twoBitToFa hg19.2bit genome.fa
 
-samtools index genome.fa
+samtools faidx genome.fa
 
 # gene.gtf
 wget ftp://ftp.sanger.ac.uk/pub/gencode/Gencode_human/release_19/gencode.v19.annotation.gtf.gz