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Add placeholder versions files + move some things into dev/ #214

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049c35d
add empty placeholders
CoryMartin-NOAA May 5, 2026
72803d8
moved ush/of_setup.sh
CoryMartin-NOAA May 5, 2026
b394bf8
move things
CoryMartin-NOAA May 5, 2026
9c8ccec
move more things around
CoryMartin-NOAA May 5, 2026
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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -21,7 +21,7 @@ This section provides instructions for running all tests in the main obsForge re

2. **Load modules** (on supported HPC systems):
```bash
source ush/of_setup.sh
source dev/ush/of_setup.sh
```

3. **Set up Python environment** for pytest:
Expand Down Expand Up @@ -141,7 +141,7 @@ pytest ush/python/pyobsforge/tests/ --disable-warnings -v

## Workflow Usage
```console
cd ush
cd dev/ush
source of_setup.sh
setup_xml.py --config ../parm/config.yaml --template ../parm/obsforge_rocoto_template.xml.j2 --output obsforge.xml
rocotorun -d obsforge.db -w obsforge.xml
Expand Down
2 changes: 1 addition & 1 deletion jobs/rocoto/aoddump.sh → dev/job_cards/rocoto/aoddump.sh
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Expand Up @@ -15,6 +15,6 @@ export jobid="${job}.$$"

###############################################################
# Execute the JJOB
"${HOMEobsforge}/jobs/JOBSFORGE_GLOBAL_AOD_DUMP"
"${HOMEobsforge}/dev/jobs/JOBSFORGE_GLOBAL_AOD_DUMP"
status=$?
exit "${status}"
2 changes: 1 addition & 1 deletion jobs/rocoto/atmosbufrdump.sh → dev/job_cards/rocoto/atmosbufrdump.sh
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Expand Up @@ -15,6 +15,6 @@ export jobid="${job}.$$"

###############################################################
# Execute the JJOB
"${HOMEobsforge}/jobs/JOBSFORGE_GLOBAL_ATMOS_BUFR_DUMP"
"${HOMEobsforge}/dev/jobs/JOBSFORGE_GLOBAL_ATMOS_BUFR_DUMP"
status=$?
exit "${status}"
2 changes: 1 addition & 1 deletion jobs/rocoto/gsitoioda.sh → dev/job_cards/rocoto/gsitoioda.sh
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Expand Up @@ -15,6 +15,6 @@ export jobid="${job}.$$"

###############################################################
# Execute the JJOB
"${HOMEobsforge}/jobs/JOBSFORGE_GLOBAL_GSI_TO_IODA"
"${HOMEobsforge}/dev/jobs/JOBSFORGE_GLOBAL_GSI_TO_IODA"
status=$?
exit "${status}"
2 changes: 1 addition & 1 deletion jobs/rocoto/marinebufrdump.sh → dev/job_cards/rocoto/marinebufrdump.sh
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Expand Up @@ -15,6 +15,6 @@ export jobid="${job}.$$"

###############################################################
# Execute the JJOB
"${HOMEobsforge}/jobs/JOBSFORGE_GLOBAL_MARINE_BUFR_DUMP"
"${HOMEobsforge}/dev/jobs/JOBSFORGE_GLOBAL_MARINE_BUFR_DUMP"
status=$?
exit "${status}"
2 changes: 1 addition & 1 deletion jobs/rocoto/marinedump.sh → dev/job_cards/rocoto/marinedump.sh
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Expand Up @@ -15,6 +15,6 @@ export jobid="${job}.$$"

###############################################################
# Execute the JJOB
"${HOMEobsforge}/jobs/JOBSFORGE_GLOBAL_MARINE_DUMP"
"${HOMEobsforge}/dev/jobs/JOBSFORGE_GLOBAL_MARINE_DUMP"
status=$?
exit "${status}"
2 changes: 1 addition & 1 deletion jobs/rocoto/stageout.sh → dev/job_cards/rocoto/stageout.sh
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Expand Up @@ -15,6 +15,6 @@ export jobid="${job}.$$"

###############################################################
# Execute the JJOB
"${HOMEobsforge}/jobs/JOBSFORGE_GLOBAL_STAGE_OUTPUT"
"${HOMEobsforge}/dev/jobs/JOBSFORGE_GLOBAL_STAGE_OUTPUT"
status=$?
exit "${status}"
0 jobs/JOBSFORGE_GLOBAL_AOD_DUMP → dev/jobs/JOBSFORGE_GLOBAL_AOD_DUMP
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0 jobs/JOBSFORGE_GLOBAL_ATMOS_BUFR_DUMP → dev/jobs/JOBSFORGE_GLOBAL_ATMOS_BUFR_DUMP
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0 jobs/JOBSFORGE_GLOBAL_GSI_TO_IODA → dev/jobs/JOBSFORGE_GLOBAL_GSI_TO_IODA
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0 jobs/JOBSFORGE_GLOBAL_MARINE_BUFR_DUMP → dev/jobs/JOBSFORGE_GLOBAL_MARINE_BUFR_DUMP
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0 jobs/JOBSFORGE_GLOBAL_MARINE_DUMP → dev/jobs/JOBSFORGE_GLOBAL_MARINE_DUMP
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File renamed without changes.
0 jobs/JOBSFORGE_GLOBAL_STAGE_OUTPUT → dev/jobs/JOBSFORGE_GLOBAL_STAGE_OUTPUT
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0 ush/of_setup.sh → dev/ush/of_setup.sh
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1 change: 1 addition & 0 deletions jobs
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@@ -0,0 +1 @@
dev/jobs/
10 changes: 5 additions & 5 deletions parm/gdas_realtime.xml.j2
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Expand Up @@ -8,7 +8,7 @@
-->
<!ENTITY PSLOT "{{ PSLOT }}">
<!ENTITY ROTDIR "{{ COMROOT }}/{{ PSLOT }}">
<!ENTITY JOBS_DIR "{{ HOMEobsforge }}/jobs/rocoto">
<!ENTITY JOBS_DIR "{{ HOMEobsforge }}/dev/job_cards/rocoto">
<!ENTITY MAXTRIES "2">
]>

Expand All @@ -27,7 +27,7 @@
-->
<task name="gcdas_aod_dump" cycledefs="gcdas" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/aoddump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/aoddump.sh</command>

<jobname><cyclestr>obsforge_gcdas_aod_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down Expand Up @@ -65,7 +65,7 @@
-->
<task name="gdas_atmos_bufr_dump" cycledefs="gdas" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/atmosbufrdump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/atmosbufrdump.sh</command>

<jobname><cyclestr>obsforge_gdas_atmos_bufr_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down Expand Up @@ -103,7 +103,7 @@
-->
<task name="gdas_marine_dump" cycledefs="gdas" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/marinedump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/marinedump.sh</command>

<jobname><cyclestr>obsforge_gdas_marine_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down Expand Up @@ -141,7 +141,7 @@
-->
<task name="gdas_marine_bufr_dump" cycledefs="gdas" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/marinebufrdump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/marinebufrdump.sh</command>

<jobname><cyclestr>obsforge_gdas_marine_bufr_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down
8 changes: 4 additions & 4 deletions parm/gfs_realtime.xml.j2
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Expand Up @@ -8,7 +8,7 @@
-->
<!ENTITY PSLOT "{{ PSLOT }}">
<!ENTITY ROTDIR "{{ COMROOT }}/{{ PSLOT }}">
<!ENTITY JOBS_DIR "{{ HOMEobsforge }}/jobs/rocoto">
<!ENTITY JOBS_DIR "{{ HOMEobsforge }}/dev/job_cards/rocoto">
<!ENTITY MAXTRIES "2">
]>

Expand All @@ -25,7 +25,7 @@
-->
<task name="gfs_atmos_bufr_dump" cycledefs="gfs" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/atmosbufrdump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/atmosbufrdump.sh</command>

<jobname><cyclestr>obsforge_gfs_atmos_bufr_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down Expand Up @@ -63,7 +63,7 @@
-->
<task name="gfs_marine_dump" cycledefs="gfs" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/marinedump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/marinedump.sh</command>

<jobname><cyclestr>obsforge_gfs_marine_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down Expand Up @@ -101,7 +101,7 @@
-->
<task name="gfs_marine_bufr_dump" cycledefs="gfs" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/marinebufrdump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/marinebufrdump.sh</command>

<jobname><cyclestr>obsforge_gfs_marine_bufr_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down
8 changes: 4 additions & 4 deletions parm/gsi_to_ioda.xml.j2
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Expand Up @@ -8,7 +8,7 @@
-->
<!ENTITY PSLOT "{{ PSLOT }}">
<!ENTITY ROTDIR "{{ COMROOT }}/{{ PSLOT }}">
<!ENTITY JOBS_DIR "{{ HOMEobsforge }}/jobs/rocoto">
<!ENTITY JOBS_DIR "{{ HOMEobsforge }}/dev/job_cards/rocoto">
<!ENTITY MAXTRIES "2">
]>

Expand All @@ -28,7 +28,7 @@
-->
<task name="gdas_gsi_to_ioda" cycledefs="gdas" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/gsitoioda.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/gsitoioda.sh</command>

<jobname><cyclestr>obsforge_gdas_gsi_to_ioda_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down Expand Up @@ -68,7 +68,7 @@
-->
<task name="gdas_atmos_bufr_dump" cycledefs="gdas" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/atmosbufrdump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/atmosbufrdump.sh</command>

<jobname><cyclestr>obsforge_gdas_atmos_bufr_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down Expand Up @@ -107,7 +107,7 @@
-->
<task name="gdas_stage_output" cycledefs="gdas" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/stageout.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/stageout.sh</command>

<jobname><cyclestr>obsforge_gdas_stage_output_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down
14 changes: 7 additions & 7 deletions parm/obsforge_rocoto_template.xml.j2
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Expand Up @@ -8,7 +8,7 @@
-->
<!ENTITY PSLOT "{{ PSLOT }}">
<!ENTITY ROTDIR "{{ COMROOT }}/{{ PSLOT }}">
<!ENTITY JOBS_DIR "{{ HOMEobsforge }}/jobs/rocoto">
<!ENTITY JOBS_DIR "{{ HOMEobsforge }}/dev/job_cards/rocoto">
<!ENTITY MAXTRIES "2">
]>

Expand All @@ -27,7 +27,7 @@
-->
<task name="gfs_aod_dump" cycledefs="gfs" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/aoddump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/aoddump.sh</command>

<jobname><cyclestr>obsforge_gfs_aod_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down Expand Up @@ -66,7 +66,7 @@
-->
<task name="gdas_aod_dump" cycledefs="gdas" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/aoddump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/aoddump.sh</command>

<jobname><cyclestr>obsforge_gdas_aod_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down Expand Up @@ -105,7 +105,7 @@
-->
<task name="gdas_atmos_bufr_dump" cycledefs="gdas" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/atmosbufrdump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/atmosbufrdump.sh</command>

<jobname><cyclestr>obsforge_gdas_atmos_bufr_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down Expand Up @@ -140,7 +140,7 @@
-->
<task name="gfs_marine_dump" cycledefs="gfs" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/marinedump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/marinedump.sh</command>

<jobname><cyclestr>obsforge_gfs_marine_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down Expand Up @@ -178,7 +178,7 @@
-->
<task name="gfs_marine_bufr_dump" cycledefs="gfs" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/marinebufrdump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/marinebufrdump.sh</command>

<jobname><cyclestr>obsforge_gfs_marine_bufr_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down Expand Up @@ -217,7 +217,7 @@
-->
<task name="gdas_marine_bufr_dump" cycledefs="gdas" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/marinebufrdump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/marinebufrdump.sh</command>

<jobname><cyclestr>obsforge_gdas_marine_bufr_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down
14 changes: 7 additions & 7 deletions parm/obsforge_rocoto_template_pbspro.xml.j2
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Expand Up @@ -8,7 +8,7 @@
-->
<!ENTITY PSLOT "{{ PSLOT }}">
<!ENTITY ROTDIR "{{ COMROOT }}/{{ PSLOT }}">
<!ENTITY JOBS_DIR "{{ HOMEobsforge }}/jobs/rocoto">
<!ENTITY JOBS_DIR "{{ HOMEobsforge }}/dev/job_cards/rocoto">
<!ENTITY MAXTRIES "2">
]>

Expand All @@ -27,7 +27,7 @@
-->
<task name="gfs_aod_dump" cycledefs="gfs" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/aoddump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/aoddump.sh</command>

<jobname><cyclestr>obsforge_gfs_aod_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down Expand Up @@ -66,7 +66,7 @@

<task name="gdas_atmos_bufr_dump" cycledefs="gdas" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/atmosbufrdump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/atmosbufrdump.sh</command>

<jobname><cyclestr>obsforge_gdas_atmos_bufr_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down Expand Up @@ -100,7 +100,7 @@
-->
<task name="gdas_aod_dump" cycledefs="gdas" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/aoddump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/aoddump.sh</command>

<jobname><cyclestr>obsforge_gdas_aod_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down Expand Up @@ -138,7 +138,7 @@
-->
<task name="gfs_marine_dump" cycledefs="gfs" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/marinedump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/marinedump.sh</command>

<jobname><cyclestr>obsforge_gfs_marine_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down Expand Up @@ -176,7 +176,7 @@
-->
<task name="gfs_marine_bufr_dump" cycledefs="gfs" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/marinebufrdump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/marinebufrdump.sh</command>

<jobname><cyclestr>obsforge_gfs_marine_bufr_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down Expand Up @@ -214,7 +214,7 @@
-->
<task name="gdas_marine_bufr_dump" cycledefs="gdas" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/marinebufrdump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/marinebufrdump.sh</command>

<jobname><cyclestr>obsforge_gdas_marine_bufr_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down
8 changes: 4 additions & 4 deletions parm/obsforge_rocoto_template_pbspro_realtime.xml.j2
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Expand Up @@ -8,7 +8,7 @@
-->
<!ENTITY PSLOT "{{ PSLOT }}">
<!ENTITY ROTDIR "{{ COMROOT }}/{{ PSLOT }}">
<!ENTITY JOBS_DIR "{{ HOMEobsforge }}/jobs/rocoto">
<!ENTITY JOBS_DIR "{{ HOMEobsforge }}/dev/job_cards/rocoto">
<!ENTITY MAXTRIES "2">
]>

Expand All @@ -28,7 +28,7 @@
-->
<task name="gcdas_aod_dump" cycledefs="gcdas" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/aoddump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/aoddump.sh</command>

<jobname><cyclestr>obsforge_gcdas_aod_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down Expand Up @@ -66,7 +66,7 @@
-->
<task name="gdas_atmos_bufr_dump" cycledefs="gdas" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/atmosbufrdump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/atmosbufrdump.sh</command>

<jobname><cyclestr>obsforge_gdas_atmos_bufr_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down Expand Up @@ -101,7 +101,7 @@
-->
<task name="gfs_marine_dump" cycledefs="gfs" maxtries="&MAXTRIES;">

<command>{{ HOMEobsforge }}/jobs/rocoto/marinedump.sh</command>
<command>{{ HOMEobsforge }}/dev/job_cards/rocoto/marinedump.sh</command>

<jobname><cyclestr>obsforge_gfs_marine_dump_@H</cyclestr></jobname>
<account>{{ ACCOUNT }}</account>
Expand Down
6 changes: 3 additions & 3 deletions parm/obsforge_test_hera.xml
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Expand Up @@ -8,7 +8,7 @@
-->
<!ENTITY PSLOT "obsforge">
<!ENTITY ROTDIR "/scratch2/NCEPDEV/stmp1/Cory.R.Martin/obsforge/COMROOT/obsforge">
<!ENTITY JOBS_DIR "/scratch2/NCEPDEV/stmp1/Cory.R.Martin/mar2025/obsforge/jobs/rocoto">
<!ENTITY JOBS_DIR "/scratch2/NCEPDEV/stmp1/Cory.R.Martin/mar2025/obsforge/dev/job_cards/rocoto">
<!ENTITY MAXTRIES "2">
]>

Expand All @@ -22,7 +22,7 @@

<task name="gfs_aod_dump" cycledefs="gfs" maxtries="&MAXTRIES;">

<command>/scratch2/NCEPDEV/stmp1/Cory.R.Martin/mar2025/obsforge/jobs/rocoto/aoddump.sh</command>
<command>/scratch2/NCEPDEV/stmp1/Cory.R.Martin/mar2025/obsforge/dev/job_cards/rocoto/aoddump.sh</command>

<jobname><cyclestr>obsforge_gfs_aod_dump_@H</cyclestr></jobname>
<account>da-cpu</account>
Expand Down Expand Up @@ -56,7 +56,7 @@

<task name="gdas_aod_dump" cycledefs="gdas" maxtries="&MAXTRIES;">

<command>/scratch2/NCEPDEV/stmp1/Cory.R.Martin/mar2025/obsforge/jobs/rocoto/aoddump.sh</command>
<command>/scratch2/NCEPDEV/stmp1/Cory.R.Martin/mar2025/obsforge/dev/job_cards/rocoto/aoddump.sh</command>

<jobname><cyclestr>obsforge_gdas_aod_dump_@H</cyclestr></jobname>
<account>da-cpu</account>
Expand Down
4 changes: 2 additions & 2 deletions test/atmos/run_test_obsforge_global_atmos_bufr_dump.sh
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Expand Up @@ -92,7 +92,7 @@ nodes: 1
ntasks_per_node: 24
threads_per_task: 1
memory: ${memory}
command: ${HOMEobsforge}/jobs/JOBSFORGE_GLOBAL_ATMOS_BUFR_DUMP
command: ${HOMEobsforge}/dev/jobs/JOBSFORGE_GLOBAL_ATMOS_BUFR_DUMP
filename: submit_${type}.sh
EOF

Expand All @@ -108,5 +108,5 @@ elif [[ $SCHEDULER = 'pbspro' ]]; then
$HOMEobsforge/test/generate_job_script.py ${config_yaml}
qsub -V -W block=true submit_${type}.sh
else
${HOMEobsforge}/jobs/JOBSFORGE_GLOBAL_ATMOS_BUFR_DUMP
${HOMEobsforge}/dev/jobs/JOBSFORGE_GLOBAL_ATMOS_BUFR_DUMP
fi
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